Data from: A transient ischemic environment induces reversible compaction of chromatin

Kirmes I, Szczurek A, Prakash K, Charapitsa I, Heiser C, Musheev M, Schock F, Fornalczyk K, Ma D, Birk U, Cremer C, Reid G

Date Published: October 2, 2015

DOI: http://dx.doi.org/10.5061/dryad.d3j00

 

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Title Part 1 of 11 Zip file of primary data for "A transient ischaemic environment induces reversible compaction of chromatin"
Downloaded 17 times
Description All image sets for the Vybrant Violet / H3K14 ac Single Molecule Localization Microscopy work (UT:9 expts; OND:12 expts; 5min:10 expts; 15min:9 expts, 60min:10 expts; 240min:9 expts). All image sets for the YOYO-1 and EdU Single Molecule Localization Microscopy work. All image sets for the DNAseI experiments (UT:11 expts; OND:11 expts). All image sets for the H2B-mCherry FRAP study, (UT:12 expts; OND:10 expts) and for H1.1-GFP FRAP study (euchromatin:10 expts; heterochromatin:11 expts; OND:11 expts). The datasets for flow cytometry: H3, panAc, K9Ac, K27ac, K4me3,K9me3 K27me3 at con, 0, 2, 5, 15 30 mins, 1 and 4 hours.
Download GenomeBiology_submission.zip.001 (5.242 Gb)
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Title Part 2 of 11 Zip file of primary data for "A transient ischaemic environment induces reversible compaction of chromatin"
Downloaded 8 times
Description All image sets for the Vybrant Violet / H3K14 ac Single Molecule Localization Microscopy work (UT:9 expts; OND:12 expts; 5min:10 expts; 15min:9 expts, 60min:10 expts; 240min:9 expts). All image sets for the YOYO-1 and EdU Single Molecule Localization Microscopy work. All image sets for the DNAseI experiments (UT:11 expts; OND:11 expts). All image sets for the H2B-mCherry FRAP study, (UT:12 expts; OND:10 expts) and for H1.1-GFP FRAP study (euchromatin:10 expts; heterochromatin:11 expts; OND:11 expts). The datasets for flow cytometry: H3, panAc, K9Ac, K27ac, K4me3,K9me3 K27me3 at con, 0, 2, 5, 15 30 mins, 1 and 4 hours.
Download GenomeBiology_submission.zip.002 (5.242 Gb)
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Title Part 3 of 11 Zip file of primary data for "A transient ischaemic environment induces reversible compaction of chromatin"
Downloaded 6 times
Description All image sets for the Vybrant Violet / H3K14 ac Single Molecule Localization Microscopy work (UT:9 expts; OND:12 expts; 5min:10 expts; 15min:9 expts, 60min:10 expts; 240min:9 expts). All image sets for the YOYO-1 and EdU Single Molecule Localization Microscopy work. All image sets for the DNAseI experiments (UT:11 expts; OND:11 expts). All image sets for the H2B-mCherry FRAP study, (UT:12 expts; OND:10 expts) and for H1.1-GFP FRAP study (euchromatin:10 expts; heterochromatin:11 expts; OND:11 expts). The datasets for flow cytometry: H3, panAc, K9Ac, K27ac, K4me3,K9me3 K27me3 at con, 0, 2, 5, 15 30 mins, 1 and 4 hours.
Download GenomeBiology_submission.zip.003 (5.242 Gb)
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Title Part 4 of 11 Zip file of primary data for "A transient ischaemic environment induces reversible compaction of chromatin"
Downloaded 8 times
Description All image sets for the Vybrant Violet / H3K14 ac Single Molecule Localization Microscopy work (UT:9 expts; OND:12 expts; 5min:10 expts; 15min:9 expts, 60min:10 expts; 240min:9 expts). All image sets for the YOYO-1 and EdU Single Molecule Localization Microscopy work. All image sets for the DNAseI experiments (UT:11 expts; OND:11 expts). All image sets for the H2B-mCherry FRAP study, (UT:12 expts; OND:10 expts) and for H1.1-GFP FRAP study (euchromatin:10 expts; heterochromatin:11 expts; OND:11 expts). The datasets for flow cytometry: H3, panAc, K9Ac, K27ac, K4me3,K9me3 K27me3 at con, 0, 2, 5, 15 30 mins, 1 and 4 hours.
Download GenomeBiology_submission.zip.004 (5.242 Gb)
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Title Part 5 of 11 Zip file of primary data for "A transient ischaemic environment induces reversible compaction of chromatin"
Downloaded 8 times
Description All image sets for the Vybrant Violet / H3K14 ac Single Molecule Localization Microscopy work (UT:9 expts; OND:12 expts; 5min:10 expts; 15min:9 expts, 60min:10 expts; 240min:9 expts). All image sets for the YOYO-1 and EdU Single Molecule Localization Microscopy work. All image sets for the DNAseI experiments (UT:11 expts; OND:11 expts). All image sets for the H2B-mCherry FRAP study, (UT:12 expts; OND:10 expts) and for H1.1-GFP FRAP study (euchromatin:10 expts; heterochromatin:11 expts; OND:11 expts). The datasets for flow cytometry: H3, panAc, K9Ac, K27ac, K4me3,K9me3 K27me3 at con, 0, 2, 5, 15 30 mins, 1 and 4 hours.
Download GenomeBiology_submission.zip.005 (5.242 Gb)
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Title Part 6 of 11 Zip file of primary data for "A transient ischaemic environment induces reversible compaction of chromatin"
Downloaded 3 times
Description All image sets for the Vybrant Violet / H3K14 ac Single Molecule Localization Microscopy work (UT:9 expts; OND:12 expts; 5min:10 expts; 15min:9 expts, 60min:10 expts; 240min:9 expts). All image sets for the YOYO-1 and EdU Single Molecule Localization Microscopy work. All image sets for the DNAseI experiments (UT:11 expts; OND:11 expts). All image sets for the H2B-mCherry FRAP study, (UT:12 expts; OND:10 expts) and for H1.1-GFP FRAP study (euchromatin:10 expts; heterochromatin:11 expts; OND:11 expts). The datasets for flow cytometry: H3, panAc, K9Ac, K27ac, K4me3,K9me3 K27me3 at con, 0, 2, 5, 15 30 mins, 1 and 4 hours.
Download GenomeBiology_submission.zip.006 (5.242 Gb)
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Title Part 7 of 11 Zip file of primary data for "A transient ischaemic environment induces reversible compaction of chromatin"
Downloaded 4 times
Description All image sets for the Vybrant Violet / H3K14 ac Single Molecule Localization Microscopy work (UT:9 expts; OND:12 expts; 5min:10 expts; 15min:9 expts, 60min:10 expts; 240min:9 expts). All image sets for the YOYO-1 and EdU Single Molecule Localization Microscopy work. All image sets for the DNAseI experiments (UT:11 expts; OND:11 expts). All image sets for the H2B-mCherry FRAP study, (UT:12 expts; OND:10 expts) and for H1.1-GFP FRAP study (euchromatin:10 expts; heterochromatin:11 expts; OND:11 expts). The datasets for flow cytometry: H3, panAc, K9Ac, K27ac, K4me3,K9me3 K27me3 at con, 0, 2, 5, 15 30 mins, 1 and 4 hours.
Download GenomeBiology_submission.zip.007 (5.242 Gb)
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Title Part 8 of 11 Zip file of primary data for "A transient ischaemic environment induces reversible compaction of chromatin"
Downloaded 5 times
Description All image sets for the Vybrant Violet / H3K14 ac Single Molecule Localization Microscopy work (UT:9 expts; OND:12 expts; 5min:10 expts; 15min:9 expts, 60min:10 expts; 240min:9 expts). All image sets for the YOYO-1 and EdU Single Molecule Localization Microscopy work. All image sets for the DNAseI experiments (UT:11 expts; OND:11 expts). All image sets for the H2B-mCherry FRAP study, (UT:12 expts; OND:10 expts) and for H1.1-GFP FRAP study (euchromatin:10 expts; heterochromatin:11 expts; OND:11 expts). The datasets for flow cytometry: H3, panAc, K9Ac, K27ac, K4me3,K9me3 K27me3 at con, 0, 2, 5, 15 30 mins, 1 and 4 hours.
Download GenomeBiology_submission.zip.008 (5.242 Gb)
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Title Part 9 of 11 Zip file of primary data for "A transient ischaemic environment induces reversible compaction of chromatin"
Downloaded 4 times
Description All image sets for the Vybrant Violet / H3K14 ac Single Molecule Localization Microscopy work (UT:9 expts; OND:12 expts; 5min:10 expts; 15min:9 expts, 60min:10 expts; 240min:9 expts). All image sets for the YOYO-1 and EdU Single Molecule Localization Microscopy work. All image sets for the DNAseI experiments (UT:11 expts; OND:11 expts). All image sets for the H2B-mCherry FRAP study, (UT:12 expts; OND:10 expts) and for H1.1-GFP FRAP study (euchromatin:10 expts; heterochromatin:11 expts; OND:11 expts). The datasets for flow cytometry: H3, panAc, K9Ac, K27ac, K4me3,K9me3 K27me3 at con, 0, 2, 5, 15 30 mins, 1 and 4 hours.
Download GenomeBiology_submission.zip.009 (5.242 Gb)
Details View File Details
Title Part 10 of 11 Zip file of primary data for "A transient ischaemic environment induces reversible compaction of chromatin"
Downloaded 6 times
Description All image sets for the Vybrant Violet / H3K14 ac Single Molecule Localization Microscopy work (UT:9 expts; OND:12 expts; 5min:10 expts; 15min:9 expts, 60min:10 expts; 240min:9 expts). All image sets for the YOYO-1 and EdU Single Molecule Localization Microscopy work. All image sets for the DNAseI experiments (UT:11 expts; OND:11 expts). All image sets for the H2B-mCherry FRAP study, (UT:12 expts; OND:10 expts) and for H1.1-GFP FRAP study (euchromatin:10 expts; heterochromatin:11 expts; OND:11 expts). The datasets for flow cytometry: H3, panAc, K9Ac, K27ac, K4me3,K9me3 K27me3 at con, 0, 2, 5, 15 30 mins, 1 and 4 hours.
Download GenomeBiology_submission.zip.010 (5.242 Gb)
Details View File Details
Title Part 11 of 11 Zip file of primary data for "A transient ischaemic environment induces reversible compaction of chromatin"
Downloaded 4 times
Description All image sets for the Vybrant Violet / H3K14 ac Single Molecule Localization Microscopy work (UT:9 expts; OND:12 expts; 5min:10 expts; 15min:9 expts, 60min:10 expts; 240min:9 expts). All image sets for the YOYO-1 and EdU Single Molecule Localization Microscopy work. All image sets for the DNAseI experiments (UT:11 expts; OND:11 expts). All image sets for the H2B-mCherry FRAP study, (UT:12 expts; OND:10 expts) and for H1.1-GFP FRAP study (euchromatin:10 expts; heterochromatin:11 expts; OND:11 expts). The datasets for flow cytometry: H3, panAc, K9Ac, K27ac, K4me3,K9me3 K27me3 at con, 0, 2, 5, 15 30 mins, 1 and 4 hours.
Download GenomeBiology_submission.zip.011 (3.049 Gb)
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When using this data, please cite the original publication:

Kirmes I, Szczurek A, Prakash K, Charapitsa I, Heiser C, Musheev M, Schock F, Fornalczyk K, Ma D, Birk U, Cremer C, Reid G (2015) A transient ischemic environment induces reversible compaction of chromatin. Genome Biology 16: 246. http://dx.doi.org/10.1186/s13059-015-0802-2

Additionally, please cite the Dryad data package:

Kirmes I, Szczurek A, Prakash K, Charapitsa I, Heiser C, Musheev M, Schock F, Fornalczyk K, Ma D, Birk U, Cremer C, Reid G (2015) Data from: A transient ischemic environment induces reversible compaction of chromatin. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.d3j00
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