Data from: Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents

Ho P, Park E, Hong SG, Kim E, Kim K, Jang S, Vrijenhoek RC, Won Y

Date Published: May 17, 2017

DOI: http://dx.doi.org/10.5061/dryad.d3r64

 

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Title Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents
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Description Sampling region of Bathymodiolus thermophilus and B. antarticus sulfur-oxidizing gammaproteobacteria EPR, East Pacific Rise GAR, Galapagos Rift PAR, Pacific-Antartic Ridge Information of population and geographic groups population group (HA) 11N EPR (HB) 9N EPR (HI) GAR EPR (HC) 7S EPR (HD) 11S EPR (HE) 17S EPR (HF) 23S EPR (HG) 32S PAR (HH) 38S PAR Folder and file information: FASTA folder - 2 folders containing multi loci DNA sequences of all the sampled individuals from 9 populations sorted by Population and Subpopulation (individual host mussel) Arlequin input files (16S) folder - input files used for calculation molecular indices of 16S gene at two levels of Population and Subpopulation Arlequin input files (Funtional genes, Subpopulation) folder - input files used for calculation molecular indices of functional genes at level of Subpopulation (individual host mussel) Input files (Functional genetic data, Population) folder - input files used for calculation of molecular indices of functional genes at level of population, synonymous/nonsynonymous substitutions estimation, symbiont isolation-by-distance test, and nucleotide substitution rate, generating haplotype networks of functional genes Polymorphic tables.xlsx - Polymorphic table of 16S and functional genes used in this study
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Title Networks with OTUs label
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Description Sequence networks of six protein-coding genes of Bathymodiolus bacterial symbionts labeling with OTUs.
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When using this data, please cite the original publication:

Ho P, Park E, Hong SG, Kim E, Kim K, Jang S, Vrijenhoek RC, Won Y (2017) Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents. BMC Evolutionary Biology 17: 121. http://dx.doi.org/10.1186/s12862-017-0966-3

Additionally, please cite the Dryad data package:

Ho P, Park E, Hong SG, Kim E, Kim K, Jang S, Vrijenhoek RC, Won Y (2017) Data from: Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.d3r64
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