Data from: Microbial invasion of the Caribbean by an Indo-Pacific coral zooxanthella

Pettay DT, Wham DC, Smith RT, Iglesias-Prieto R, LaJeunesse TC

Date Published: June 4, 2015

DOI: http://dx.doi.org/10.5061/dryad.d4152

 

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Title R-script for the analysis Symbiodinium trenchii in the Caribbean
Description Source code for the analysis of observed pairwise genetic difference (PWD), expected PWD under panmixia, and permutation test for departure from expected pairwise genetic difference for microsatellite MLGs datasets from a population of S. trenchii in the Greater Caribbean, West Atlantic Ocean.
Download PWD analysis S.trenchii Caribbean.R (7.34 Kb)
Download README.docx (47.19 Kb)
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Title R-script for the analysis Symbiodinium trenchii in the Andaman Sea (Thailand)
Description Source code for the analysis of observed pairwise genetic difference (PWD), expected PWD under panmixia, and permutation test for departure from expected pairwise genetic difference for microsatellite MLGs datasets from a population of S. trenchii in the Andaman Sea (Thailand), Eastern Indian Ocean.
Download PWD analysis S.trenchii Thailand.R (7.339 Kb)
Download README.docx (47.19 Kb)
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Title R-script for the analysis Symbiodinium trenchii in the Western Pacific (Palau
Description Source code for the analysis of observed pairwise genetic difference (PWD), expected PWD under panmixia, and permutation test for departure from expected pairwise genetic difference for microsatellite MLGs datasets from a population of S. trenchii in the West Pacific Ocean (Palau).
Download PWD analysis S.trenchii Palau.R (7.336 Kb)
Download README.docx (47.19 Kb)
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Title R-script for the analysis Symbiodinium type A3 in the Eastern Caribbean
Description Source code for the analysis of observed pairwise genetic difference (PWD), expected PWD under panmixia, and permutation test for departure from expected pairwise genetic difference for microsatellite MLGs datasets from a population of Symbiodinium A3 (S. ‘fitti’ nomen nudum) in the Eastern Caribbean, West Atlantic Ocean.
Download PWD analysis Sym. A3 East Carib.R (3.107 Kb)
Download README.docx (47.19 Kb)
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Title R-script for the analysis Symbiodinium type B7 in the Caribbean
Description Source code for the analysis of observed pairwise genetic difference (PWD), expected PWD under panmixia, and permutation test for departure from expected pairwise genetic difference for microsatellite MLGs datasets from a population of Symbiodinium B7 from corals in the genus Madracis in the Caribbean, West Atlantic Ocean.
Download PWD analysis Sym. B7 Caribbeanwide.R (3.115 Kb)
Download README.docx (47.19 Kb)
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Title R-script for the analysis Symbiodinium type C7 in the western Caribbean
Description Source code for the analysis of observed pairwise genetic difference (PWD), expected PWD under panmixia, and permutation test for departure from expected pairwise genetic difference for microsatellite MLGs datasets from a population of Symbiodinium C7 in the Western Caribbean (Belize), West Atlantic Ocean.
Download PWD analysis Sym. C7 Belize.R (3.109 Kb)
Download README.docx (47.19 Kb)
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Title R-script for the analysis Symbiodinium type D1 ‘S. glynni’ in the Eastern Pacific
Description Source code for the analysis of observed pairwise genetic difference (PWD), expected PWD under panmixia, and permutation test for departure from expected pairwise genetic difference for microsatellite MLGs datasets from a population of Symbiodinium ‘glynni’ (nomen nudum, = type D1) in the Gulf of California (La Paz), Eastern Pacific Ocean.
Download PWD analysis Sym. D1 Gulf of California.R (3.107 Kb)
Download README.docx (47.19 Kb)
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Title Symbiodinium trenchii Caribbean
Description Excel data files of multilocus genotypes (MLGs) based on microsatellites for Symbiodinium trenchii in the Caribbean
Download Symbiodinium trenchii Caribbean.csv (11.99 Kb)
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Title Symbiodinium trenchii Thailand
Description Excel data files of multilocus genotypes (MLGs) based on microsatellites for Symbiodinium trenchii in the Andaman Sea (Thailand)
Download Symbiodinium trenchii Thailand.csv (6.188 Kb)
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Title Symbiodinium trenchii Palau
Description Excel data files of multilocus genotypes (MLGs) based on microsatellites for Symbiodinium trenchii in the Western Pacific (Palau)
Download Symbiodinium trenchii Palau.csv (8.148 Kb)
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Title Symbiodinium type A3_East Carib
Description Excel data files of multilocus genotypes (MLGs) based on microsatellites for Symbiodinium type A3 in the Eastern Caribbean
Download Symbiodinium type A3_East Carib.csv (26.70 Kb)
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Title Symbiodinium type B7 Caribbean
Description Excel data files of multilocus genotypes (MLGs) based on microsatellites for Symbiodinium type B7 in the Caribbean.
Download Symbiodinium type B7 Caribbean.csv (1.696 Kb)
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Title Symbiodinium type C7 Belize
Description Excel data files of multilocus genotypes (MLGs) based on microsatellites for Symbiodinium type C7 in the western Caribbean.
Download Symbiodinium type C7 Belize.csv (2.619 Kb)
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Title Symbiodinium type D1 Gulf of California
Description Excel data files of multilocus genotypes (MLGs) based on microsatellites for Symbiodinium type D1 ‘S. glynni’ in the Eastern Pacific.
Download Symbiodinium type D1 gulf of california.csv (5.344 Kb)
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When using this data, please cite the original publication:

Pettay DT, Wham DC, Smith RT, Iglesias-Prieto R, LaJeunesse TC (2015) Microbial invasion of the Caribbean by an Indo-Pacific coral zooxanthella. Proceedings of the National Academy of Sciences of the United States of America 112(24): 7513–7518. http://dx.doi.org/10.1073/pnas.1502283112

Additionally, please cite the Dryad data package:

Pettay DT, Wham DC, Smith RT, Iglesias-Prieto R, LaJeunesse TC (2015) Data from: Microbial invasion of the Caribbean by an Indo-Pacific coral zooxanthella. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.d4152
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