Data from: The importance of standardization for biodiversity comparisons: a case study using Autonomous Reef Monitoring Structures (ARMS) and metabarcoding to measure cryptic diversity on Mo'orea coral reefs, French Polynesia

Ransome E, Geller JB, Timmers M, Leray M, Mahardini A, Sembiring A, Collins AG, Meyer CP

Date Published: April 24, 2017

DOI: http://dx.doi.org/10.5061/dryad.d47fm

 

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Title PGM_DATA_MotileExperiment
Downloaded 5 times
Description This file contains raw PGM (Ion Torrent, Life technology) data for adaptors 1, 2 and 3. See file "PGM_SequencingRuns" for corresponding samples.
Download PGM_DATA_MotileExperiment.zip (613.1 Mb)
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Title PGM_DATA_SessileExperiment_Run2
Downloaded 3 times
Description This file contains raw PGM (Ion Torrent, Life technologies) data for adaptors 6, 13, 14 and 16. See file "PGM_SequencingRuns" for corresponding samples.
Download PGM_DATA_SessileExperiment_Run2.zip (1.024 Gb)
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Title PGM_DATA_SessileExperiment_Run3
Downloaded 5 times
Description This file contains raw PGM (Ion Torrent, Life technology) data for adaptors 10, 11, 12 and 15. See file "PGM_SequencingRuns" for corresponding samples.
Download PGM_DATA_SessileExperiment_Run3.zip (752.5 Mb)
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Title PGM_DATA_SessileExperiment_Run4
Downloaded 5 times
Description This file contains raw PGM (Ion Torrent, Life technology) data for adaptors 8 and 9. See file "PGM_SequencingRuns" for corresponding samples.
Download PGM_DATA_SessileExperiment_Run4.zip (472.3 Mb)
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Title PGM_SequencingRuns
Downloaded 10 times
Description The table presents the strategy used for multiplexing samples.
Download PGM_SequencingRuns.pdf (21.39 Kb)
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Title Metabarcode_OTUrepresentatives
Downloaded 3 times
Description This file contains one representative sequence per OTU
Download Metabarcode_OTUrepresentatives.fasta (826.6 Kb)
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Title Metabarcode_OTUtables
Downloaded 7 times
Description This file contains an OTU table from each experiment and identifications for each OTU from Biocode, NCBI, BOLD and SAP.
Download Metabarcode_OTUtables.xlsx (729.6 Kb)
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When using this data, please cite the original publication:

Ransome E, Geller JB, Timmers M, Leray M, Mahardini A, Sembiring A, Collins AG, Meyer CP (2017) The importance of standardization for biodiversity comparisons: a case study using Autonomous Reef Monitoring Structures (ARMS) and metabarcoding to measure cryptic diversity on Mo'orea coral reefs, French Polynesia. PLOS ONE 12(4): e0175066. http://dx.doi.org/10.1371/journal.pone.0175066

Additionally, please cite the Dryad data package:

Ransome E, Geller JB, Timmers M, Leray M, Mahardini A, Sembiring A, Collins AG, Meyer CP (2017) Data from: The importance of standardization for biodiversity comparisons: a case study using Autonomous Reef Monitoring Structures (ARMS) and metabarcoding to measure cryptic diversity on Mo'orea coral reefs, French Polynesia. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.d47fm
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