Data from: Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower

Edger PP, Smith RD, McKain MR, Cooley AM, Vallejo-Marin M, Yuan Y, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs K, Washburn JD, Schmitz R, Smith GD, Pires JC, Puzey JR

Date Published: September 6, 2017

DOI: https://doi.org/10.5061/dryad.d4vr0.2

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Title Mimulus Annotation and Expression Analyses
Downloaded 19 times
Description Gene expression data (raw counts and RPKM) for all transcriptome libraries analyzed in the manuscript. In addition, genome annotation and orthogroups for syntenic orthologs that were further analyzed, with full descriptions, are in the zipped file.
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Title Mimulus_luteus.faa
Downloaded 14 times
Description Fasta file of M. luteus genome assembly
Download Mimulus_luteus.faa.zip (126.2 Mb)
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Title Mimulus_luteus_complete_w_single_exons_standard_renamed_genes.gff
Downloaded 18 times
Description GFF genome annotation file of Mimulus luteus. This GFF file provides gene annotation for the M. luteus genome assembly published in this paper.
Download Mimulus_luteus_complete_w_single_exons_st...ff.zip (151.0 Mb)
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Title Mimulus_guttatus_complete_w_single_exons_standard_renamed_genes.gff
Downloaded 16 times
Description GFF genome annotation file of Mimulus guttatus. This GFF file provides gene annotation for the M. guttatus genome v2.0 on available on Phytzome.
Download Mimulus_guttatus_complete_w_single_exons_...ff.zip (90.16 Mb)
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Title Alignments
Downloaded 5 times
Description This folder contains coding sequence alignments and single copy ortholog alignments used to conduct phylogenetic analyses in this paper.
Download alignments.tar (1.699 Gb)
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When using this data, please cite the original publication:

Edger PP, Smith R, McKain MR, Cooley AM, Vallejo-Marin M, Yuan Y, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs KL, Washburn JD, Schmitz RJ, Smith GD, Pires JC, Puzey JR (2017) Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower. The Plant Cell 29(9): 2150-2167. https://doi.org/10.1105/tpc.17.00010

Additionally, please cite the Dryad data package:

Edger PP, Smith RD, McKain MR, Cooley AM, Vallejo-Marin M, Yuan Y, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs K, Washburn JD, Schmitz R, Smith GD, Pires JC, Puzey JR (2017) Data from: Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower. Dryad Digital Repository. https://doi.org/10.5061/dryad.d4vr0.2
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