Data from: Digging for gold nuggets: uncovering novel candidate genes for variation in gastrointestinal nematode burden in a wild bird species

Wenzel MA, Piertney SB

Date Published: February 16, 2015

DOI: http://dx.doi.org/10.5061/dryad.d51j3

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Unphased and phased sequence alignments
Downloaded 33 times
Description Contains one unphased and one phased FASTA file per locus. The unphased files contain a single sequence per individual, where heterozygous sites are coded as ambiguous bases and missing sites as "?". The phased files contain two reconstructed haplotypes per individual, where missing sites have been imputed using PHASE. Note that all files contain polymorphic sites only.
Download alignments.zip (31.94 Kb)
Details View File Details
Title Haplotype reference panels
Downloaded 3 times
Description Contains anonymised known haplotypes for haplotype reconstruction using PHASE.
Download haplotype_reference_panels.zip (10.69 Kb)
Details View File Details
Title Phenotypic data
Downloaded 9 times
Description Contains the following phenotypic measurements and sampling-related meta data: Age (Y=<1 year, O=>1 year), Sex, comb area (mm^2), body mass (g), population ID (1-21), presence/absence of anthelmintic grit and nematode burden (worms per bird).
Download phenotypes.txt (4.928 Kb)
Details View File Details

When using this data, please cite the original publication:

Wenzel MA, Piertney SB (2015) Digging for gold nuggets: uncovering novel candidate genes for variation in gastrointestinal nematode burden in a wild bird species. Journal of Evolutionary Biology 28(4): 807–825. http://dx.doi.org/10.1111/jeb.12614

Additionally, please cite the Dryad data package:

Wenzel MA, Piertney SB (2015) Data from: Digging for gold nuggets: uncovering novel candidate genes for variation in gastrointestinal nematode burden in a wild bird species. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.d51j3
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: