Data from: Accounting for experimental noise reveals that mRNA levels, amplified by post-transcriptional processes, largely determine steady-state protein levels in yeast

Csárdi G, Franks A, Choi DS, Airoldi EM, Drummond DA

Date Published: May 11, 2015

DOI: http://dx.doi.org/10.5061/dryad.d644f

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title S. cerevisiae raw mRNA and protein measurements
Downloaded 56 times
Description Raw mRNA and protein measurements for haploid budding yeast (S.cerevisiae) growing exponentially in rich medium with glucose
Download scer-mrna-protein-raw.txt (3.095 Mb)
Download README.txt (1.335 Kb)
Details View File Details
Title S. cerevisiae log-transformed SCM-normalized mRNA and protein measurements
Downloaded 25 times
Description SCM-normalized mRNA and protein measurements for haploid budding yeast (S.cerevisiae) growing exponentially in rich medium with glucose
Download scer-mrna-protein-normalized.txt (3.159 Mb)
Download README.txt (1.335 Kb)
Details View File Details
Title S. cerevisiae SCM estimates of mRNA and protein levels, log-transformed and unscaled
Downloaded 17 times
Description SCM estimates of mRNA and protein levels, log-transformed and unscaled, for haploid budding yeast (S.cerevisiae) growing exponentially in rich medium with glucose
Download README.txt (1.335 Kb)
Download scer-mrna-protein-unscaled-estimate.txt (311.6 Kb)
Details View File Details
Title S. cerevisiae log-transformed SCM-normalized mRNA and protein measurements, with imputed values
Downloaded 17 times
Description SCM-normalized mRNA and protein measurements, with imputed values, for haploid budding yeast (S.cerevisiae) growing exponentially in rich medium with glucose
Download scer-mrna-protein-normalized-imputed.txt (3.536 Mb)
Download README.txt (1.335 Kb)
Details View File Details
Title S. cerevisiae SCM estimates of mRNA and protein levels, log-transformed and unscaled
Downloaded 11 times
Description SCM estimates of mRNA and protein levels, log-transformed and unscaled, for haploid budding yeast (S.cerevisiae) growing exponentially in rich medium with glucose
Download README.txt (1.335 Kb)
Download scer-mrna-protein-unscaled-estimate.txt (292.4 Kb)
Details View File Details
Title Ribosome density, mRNA level, and translational efficiency measurements for haploid budding yeast (S.cerevisiae) growing exponentially in rich medium with glucose
Downloaded 50 times
Description Measurements and summary statistics for RNA-seq mRNA levels, ribosome footprint density, and translational efficiency for haploid budding yeast (S.cerevisiae) growing exponentially in rich medium with glucose
Download scer-translational-efficiency.txt (667.1 Kb)
Download README.txt (1.335 Kb)
Details View File Details
Title S. cerevisiae sampled absolute mRNA and protein levels, scaled to (average) molecules per haploid cell, sampled from SCM estimates
Downloaded 19 times
Description mRNA and protein levels, scaled to (average) molecules per haploid cell, sampled according to SCM estimates, for haploid budding yeast (S.cerevisiae) growing exponentially in rich medium with glucose
Download scer-mrna-protein-absolute-estimate-sample.txt (207.2 Kb)
Download README.txt (1.335 Kb)
Details View File Details
Title S. cerevisiae absolute mRNA and protein levels, scaled to (average) molecules per haploid cell, estimated by SCM
Downloaded 19 times
Description SCM estimates of absolute mRNA and protein levels, scaled to (average) molecules per haploid cell, for haploid budding yeast (S.cerevisiae) growing exponentially in rich medium with glucose
Download scer-mrna-protein-absolute-estimate.txt (272.4 Kb)
Download README.txt (1.335 Kb)
Details View File Details

When using this data, please cite the original publication:

Csárdi G, Franks A, Choi DS, Airoldi EM, Drummond DA (2015) Accounting for experimental noise reveals that mRNA levels, amplified by post-transcriptional processes, largely determine steady-state protein levels in yeast. PLOS Genetics 11(5): e1005206. http://dx.doi.org/10.1371/journal.pgen.1005206

Additionally, please cite the Dryad data package:

Csárdi G, Franks A, Choi DS, Airoldi EM, Drummond DA (2015) Data from: Accounting for experimental noise reveals that mRNA levels, amplified by post-transcriptional processes, largely determine steady-state protein levels in yeast. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.d644f
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: