Data from: Dry habitats were crucibles of domestication in the evolution of agriculture in ants

Branstetter MG, Ješovnik A, Sosa-Calvo J, Lloyd MW, Faircloth BC, Brady SG, Schultz TR

Date Published: April 19, 2017

DOI: http://dx.doi.org/10.5061/dryad.d7pr6

 

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Title Raw illumina reads (SRA BioProject PRJNA379607).
Description Raw illumina reads for all newly sequenced specimens in this study.
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Title Alignment supermatrices - filtered, trimmed
Downloaded 4 times
Description Several of the concatenated supermatrices analyzed in this study. Includes the attine-118t-f75 matrix, attine-119t-f75 matrix, and the attine-118t-f75-base-comp matrix.
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Title Data partitioning schemes
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Description Data partitioning schemes for the attine-118t-f75 supermatrix. Includes by-locus, rculster, and kmeans schemes. In RAxML format.
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Title BEAST XML data files.
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Description All BEAST XML files used in divergence dating analyses. Five separate DNA matrices were created using 20 randomly selected UCE loci.
Download beast-xml-files.zip (1.324 Mb)
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Title Bigeography, trait, and diversification rate analysis files
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Description Data files and scripts for all biogeography, trait, and diversification rate analyses.
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Title All phylogenetic trees
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Description All resulting phylogenetic trees generated in this study.
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Title Supplementary tables
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Description All supplementary tables (same as Appendix 1 in paper).
Download supplementary-tables.xls (121.8 Kb)
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Title UCE alignments - unfiltered, untrimmed
Downloaded 3 times
Description UCE alignments for the 118t and 119t datasets. Data were aligned using MAFFT, but were not trimmed or filtered. Data from the 119t alignment set were uploaded to GenBank.
Download uce-alignments-untrimmed.zip (66.13 Mb)
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Title Trinity assemblies
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Description Bulk trinity assemblies. Includes newly sequenced samples and samples from previous studies.
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When using this data, please cite the original publication:

Branstetter MG, Ješovnik A, Sosa-Calvo J, Lloyd MW, Faircloth BC, Brady SG, Schultz TR (2017) Dry habitats were crucibles of domestication in the evolution of agriculture in ants. Proceedings of the Royal Society B 284(1852): 20170095. http://dx.doi.org/10.1098/rspb.2017.0095

Additionally, please cite the Dryad data package:

Branstetter MG, Ješovnik A, Sosa-Calvo J, Lloyd MW, Faircloth BC, Brady SG, Schultz TR (2017) Data from: Dry habitats were crucibles of domestication in the evolution of agriculture in ants. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.d7pr6
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