Data from: Environmental gradients and the evolution of successional habitat specialization: a test case with 14 Neotropical forest sites

Letcher SG, Lasky JR, Chazdon RL, Norden N, Wright SJ, Meave JA, Pérez-García EA, Muñoz R, Romero-Pérez E, Andrade A, Andrade JL, Balvanera P, Becknell JM, Bentos TV, Bhaskar R, Bongers F, Boukili V, Brancalion PHS, César RG, Clark DA, Clark DB, Craven D, DeFrancesco A, Dupuy JM, Finegan B, González-Jiménez E, Hall JS, Harms KE, Hernández-Stefanoni JL, Hietz P, Kennard D, Killeen TJ, Laurance SG, Lebrija-Trejos EE, Lohbeck M, Martínez-Ramos M, Massoca PES, Mesquita RCG, Muscarella R, Mora F, Paz H, Pineda-García F, Powers JS, Quesada-Monge R, Rodrigues RR, Sandor ME, Sanaphre-Villanueva L, Schüller E, Swenson NG, Tauro A, Uriarte M, van Breugel M, Vargas-Ramírez O, Viani RAG, Wendt AL, Williamson GB

Date Published: June 8, 2015

DOI: http://dx.doi.org/10.5061/dryad.d87v7

 

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Title R script for calculating D
Downloaded 19 times
Description calculates Fritz & Purvis's D for successional habitat specialization at each site and for the entire phylogeny used in this study
Download Dcalc.r (23.01 Kb)
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Title R script for brunch/crunch analysis
Downloaded 18 times
Description calculates brunch/crunch as appropriate for functional trait data with respect to successional habitat specialization
Download brunchncrunch.r (13.52 Kb)
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Title Phylogeny
Downloaded 11 times
Description This file contains a supertree of all the taxa at all sites that were used in the analysis presented in Letcher et al. 2015; site-specific phylogenies can be generated by taking subsets of this tree.
Download TREE_Mar12_bladj.new (33.85 Kb)
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Title Species abundances
Downloaded 45 times
Description Contains the number of individuals in old-growth and secondary forest for each species at each site.
Download taxa.csv (418.1 Kb)
Download README.txt (1.728 Kb)
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Title Functional trait data
Downloaded 59 times
Description Functional trait data
Download traits.csv (132.2 Kb)
Download README.txt (1.728 Kb)
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Title Site locations
Downloaded 13 times
Description Latitude and longitude of sites used in this study.
Download sitelocs.csv (541 bytes)
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When using this data, please cite the original publication:

Letcher SG, Lasky JR, Chazdon RL, Norden N, Wright SJ, Meave JA, Pérez-García EA, Muñoz R, Romero-Pérez E, Andrade A, Andrade JL, Balvanera P, Becknell JM, Bentos TV, Bhaskar R, Bongers F, Boukili V, Brancalion PHS, César RG, Clark DA, Clark DB, Craven D, DeFrancesco A, Dupuy JM, Finegan B, González-Jiménez E, Hall JS, Harms KE, Hernández-Stefanoni JL, Hietz P, Kennard D, Killeen TJ, Laurance SG, Lebrija-Trejos EE, Lohbeck M, Martínez-Ramos M, Massoca PES, Mesquita RCG, Muscarella R, Mora F, Paz H, Pineda-García F, Powers JS, Quesada-Monge R, Rodrigues RR, Sandor ME, Sanaphre-Villanueva L, Schüller E, Swenson NG, Tauro A, Uriarte M, van Breugel M, Vargas-Ramírez O, Viani RAG, Wendt AL, Williamson GB (2015) Environmental gradients and the evolution of successional habitat specialization: a test case with 14 Neotropical forest sites. Journal of Ecology 103(5): 1276-1290. http://dx.doi.org/10.1111/1365-2745.12435

Additionally, please cite the Dryad data package:

Letcher SG, Lasky JR, Chazdon RL, Norden N, Wright SJ, Meave JA, Pérez-García EA, Muñoz R, Romero-Pérez E, Andrade A, Andrade JL, Balvanera P, Becknell JM, Bentos TV, Bhaskar R, Bongers F, Boukili V, Brancalion PHS, César RG, Clark DA, Clark DB, Craven D, DeFrancesco A, Dupuy JM, Finegan B, González-Jiménez E, Hall JS, Harms KE, Hernández-Stefanoni JL, Hietz P, Kennard D, Killeen TJ, Laurance SG, Lebrija-Trejos EE, Lohbeck M, Martínez-Ramos M, Massoca PES, Mesquita RCG, Muscarella R, Mora F, Paz H, Pineda-García F, Powers JS, Quesada-Monge R, Rodrigues RR, Sandor ME, Sanaphre-Villanueva L, Schüller E, Swenson NG, Tauro A, Uriarte M, van Breugel M, Vargas-Ramírez O, Viani RAG, Wendt AL, Williamson GB (2015) Data from: Environmental gradients and the evolution of successional habitat specialization: a test case with 14 Neotropical forest sites. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.d87v7
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