Data from: Population genomic evidence for adaptive differentiation in the Baltic Sea herring

Guo B, Li Z, Merilä J

Date Published: April 15, 2016

DOI: http://dx.doi.org/10.5061/dryad.d8b93

 

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Title Nucleotide diversity in each of the 20 herring populations
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Description Nucleotide diversity in each populations was obtained using popoolation, and parameters used could be found in the readme.txt.
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Title Fst distribution across the herring genome
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Description Fst distribution across the herring genome was obtained with popoolation2m, and parameters used could be found in readme.txt.
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Download README.txt (286 bytes)
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Title outlier detection
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Description Outlier detection with both empirical and BayeScan tests in both all of the 20 and just 17 Baltic Sea herring populations.
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Title Genetic differentiation associated with environmental parameters
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Description Detecting association between Genetic differentiation and environmental parameters with Bayenv.
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Title Environmental files
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Description Environmental files used in Bayenv analysis.
Download PCs.env.tar.gz (713 bytes)
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Title Genetic distance metrices used for PCoA
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Download PCoA_genetic_distance_metrices.txt (1.985 Kb)
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Title Genetic and geographic distance metrices used for IBD
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Title reference sequences and SNP annotation
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Download ref_seq_and_SNP_annotation.tar.gz (13.17 Mb)
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When using this data, please cite the original publication:

Guo B, Li Z, Merilä J (2016) Population genomic evidence for adaptive differentiation in the Baltic Sea herring. Molecular Ecology 25(12): 2833-2852. http://dx.doi.org/10.1111/mec.13657

Additionally, please cite the Dryad data package:

Guo B, Li Z, Merilä J (2016) Data from: Population genomic evidence for adaptive differentiation in the Baltic Sea herring. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.d8b93
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