Data from: An exon-capture system for the entire class Ophiuroidea

Hugall AF, O'Hara TD, Hunjan S, Nilsen R, Moussalli A

Date Published: October 28, 2015

DOI: http://dx.doi.org/10.5061/dryad.db339

 

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Title Phylogenetic data matrix
Downloaded 23 times
Description Zipped fasta format datamatrix of 417 samples for 1494 exons used to infer associated RAxML phylogenetic tree. See main ReadMe file for details.
Download set417_TASSMAP_ExT4.zip (31.34 Mb)
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Title Phylogenetic tree figure
Downloaded 29 times
Description PDF figure of the RAxML bootstrap phylogenetic tree generated from the 417 sample 1494 exon phylogenetic data matrix. See main ReadMe file for details.
Download set417_TASSMAP_ExT4_RAxML.pdf (29.33 Kb)
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Title Phylogenetic tree
Downloaded 9 times
Description Newick format RAxML tree of 417 samples using 1494 exons. See main ReadMe file for details.
Download set417_TASSMAP_ExT4_RAxML.phy (35.39 Kb)
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Title Information Tables
Downloaded 21 times
Description Excel format tables S1-3 providing information on samples, exons and genes. See main ReadMe for details.
Download Supp_Tables_v3.xlsx (307.9 Kb)
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Title Dryad_submission_ReadMe_v1
Downloaded 28 times
Description Word format main readme file, with information on contents of this DRYAD package.
Download Dryad_submission_ReadMe_v1.docx (25.72 Kb)
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Title Reference files
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Description Nucleotide and amino acid fasta format reference files, and associated mapping text files; zipped.
Download reference_files.zip (2.830 Mb)
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Title mapping pipeline scripts
Downloaded 25 times
Description Biolinux shell script files for contig and read mapping and COI candidate contig collation. See main ReadMe file for details.
Download shell_scripts.zip (11.98 Kb)
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Title OPH01
Downloaded 4 times
Description OPH01 trimmed fastq.gz reads - 175 files, 83 samples
Download OPH01_trimmed.tar (7.951 Gb)
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Title OPH02
Downloaded 7 times
Description OPH02 trimmed fastq.gz read files - 190 files, 95 samples
Download OPH02_trimmed.tar (10.96 Gb)
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Title OPH03
Downloaded 6 times
Description OPH03 trimmed fastq.gz read files - 192 files, 96 samples
Download OPH03_trimmed.tar (7.876 Gb)
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Title OPH04
Downloaded 4 times
Description OPH04 trimmed fastq.gz read files - 192 files, 96 samples
Download OPH04_trimmed.tar (6.903 Gb)
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When using this data, please cite the original publication:

Hugall AF, O'Hara TD, Hunjan S, Nilsen R, Moussalli A (2015) An exon-capture system for the entire class Ophiuroidea. Molecular Biology and Evolution 33(1): 281-294. http://dx.doi.org/10.1093/molbev/msv216

Additionally, please cite the Dryad data package:

Hugall AF, O'Hara TD, Hunjan S, Nilsen R, Moussalli A (2015) Data from: An exon-capture system for the entire class Ophiuroidea. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.db339
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