Data from: Taxon-rich phylogenomic analyses resolve the eukaryotic tree of life and reveal the power of subsampling by sites

Katz LA, Grant JR

Date Published: June 14, 2016

DOI: http://dx.doi.org/10.5061/dryad.db78g.2

 

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Title Supplemental_Data
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Description Includes Table S3:Monophyly of subclades, S4:Subsampling results and tree data as newick strings
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Title Table_S1
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Description Table_S1.xlsx: Taxon source and code Taxa are listed by major clade, and information is given about the source of the data (e.g. OrthoMCL, Genbank, Moore Transcriptome Project). Codes used throughout the study are given. Taxa in red are in Phylobayes analysis but removed from other analyses
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Title Table_S2
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Description Table_S2.xlsx: Presence/Absence of genes x taxa Genes present by taxon. 1 = present; 0 = absent. Genes are given by OG name (OrthoMCL) and are marked with an * if a member of the 150 most even gene dataset and with a ^ if identified as a gene affected by EGT
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Title All_1554
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Description Alignment file; 1554 genes; eukaryotes, bacteria and archaea.
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Title Euk_1554
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Description Alignment file; 1554 genes; eukaryotes
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Title All_150
Downloaded 5 times
Description Alignment file; 150 genes; eukaryotes, bacteria and archaea
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Title Euk_150
Downloaded 3 times
Description Alignment file; 150 genes; eukaryotes.
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Title All_1554_noEGT
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Description Alignment file; 1554 genes minus egt genes; eukaryotes, bacteria and archaea
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Title Euk_1554_noEGT
Downloaded 3 times
Description Alignment file; 1554 genes minus egt genes; eukaryotes
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Title All_150_noEGT
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Description Alignment file; 150 genes minus egt genes; eukaryotes, bacteria and archaea
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Title Euk_150_noEGT
Downloaded 3 times
Description Alignment file; 150 genes minus egt genes; eukaryotes.
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Title 1554_Single_gene_alignments_All
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Description All 1554 single gene alignments with all taxa. Data were concatenated and columns with > 50% missing data in eukaryotic taxa were removed to make the large matrices analyzed in this study.
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Title 1554_Single_gene_alignments_Euk_only
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Description All 1554 single gene alignments with only eukaryotic taxa. Data were concatenated and columns with > 50% missing data were removed to make the large matrices analyzed in this study.
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When using this data, please cite the original publication:

Katz LA, Grant JR (2015) Taxon-rich phylogenomic analyses resolve the eukaryotic tree of life and reveal the power of subsampling by sites. Systematic Biology 64(3): 406-415. http://dx.doi.org/10.1093/sysbio/syu126

Additionally, please cite the Dryad data package:

Katz LA, Grant JR (2014) Data from: Taxon-rich phylogenomic analyses resolve the eukaryotic tree of life and reveal the power of subsampling by sites. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.db78g.2
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