Data from: Characterization of the genome and transcriptome of the blue tit Cyanistes caeruleus: polymorphisms, sex-biased expression and selection signals

Mueller JC, Kuhl H, Timmermann B, Kempenaers B

Date Published: July 23, 2015

DOI: http://dx.doi.org/10.5061/dryad.dc56b

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Tests for sex-differential expression in gonads
Downloaded 3 times
Description Cuffdiff results files; differential expression of all gonadal genes between 5 male and 5 female blue tits
Download Cuffdiff_gonads_gene_exp.diff (7.772 Mb)
Details View File Details
Title Tests for sex-differential expression in pooled organs
Downloaded 1 time
Description Cuffdiff results file; Differential expression of all pooled organ genes between 5 male and 5 female blue tits
Download Cuffdiff_organs_gene_exp.diff (7.296 Mb)
Details View File Details
Title Tests for sex-differential expression in the brain
Downloaded 2 times
Description Cuffdiff results files; differential expression of all brain genes between 5 male and 5 female blue tits.
Download Cuffdiff_brain_gene_exp.diff (7.354 Mb)
Details View File Details
Title Annotated SNPs in male-specifc transcriptome
Downloaded 3 times
Description vcf file: annotated SNPs in male-specific transcriptome; annotated using SnpEff; based on 5 male blue tits
Download RNAseq_5ind_mspeccuffsnpsel1_eff.zip (4.187 Mb)
Details View File Details
Title Annotated SNPs in female-specific transcriptome
Downloaded 1 time
Description vcf file: annotated SNPs in female-specific transcriptome; annotated using SnpEff; based on 5 female blue tits
Download RNAseq_5ind_fspeccuffsnpsel1_eff.zip (1.896 Mb)
Details View File Details
Title Annotated SNPs in transcriptome common to both sexes
Downloaded 1 time
Description vcf file: annotated SNPs in transcriptome common to both sexes; annotated using SnpEff; based on 5 male and 5 female blue tits.
Download RNAseq_10ind_mandfcuffsnpsel1_eff.zip (58.28 Mb)
Details View File Details
Title Tajima's D across all 25 kb windows of the blue tit genome
Downloaded 2 times
Description based on SNPs called from the transcriptome of 5 male and 5 female blue tits.
Download RNAseq10ind_mandfcuff_25kb.Tajima.D (1.206 Mb)
Details View File Details
Title iHS values across all informative scaffolds
Downloaded 1 time
Description based on SNPs called from the transcriptome of 5 male and 5 female blue tits.
Download resihs_allscaff2.txt (18.07 Mb)
Details View File Details

When using this data, please cite the original publication:

Mueller JC, Kuhl H, Timmermann B, Kempenaers B (2015) Characterization of the genome and transcriptome of the blue tit Cyanistes caeruleus: polymorphisms, sex-biased expression and selection signals. Molecular Ecology Resources 16(2): 549-561. http://dx.doi.org/10.1111/1755-0998.12450

Additionally, please cite the Dryad data package:

Mueller JC, Kuhl H, Timmermann B, Kempenaers B (2015) Data from: Characterization of the genome and transcriptome of the blue tit Cyanistes caeruleus: polymorphisms, sex-biased expression and selection signals. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.dc56b
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: