Data from: Differential hippocampal gene expression is associated with climate-related natural variation in memory and the hippocampus in food-caching chickadees

Pravosudov VV, Roth II TC, Forister ML, LaDage LD, Kramer R, Schilkey F, van der Linden AM

Date Published: October 31, 2012

DOI: http://dx.doi.org/10.5061/dryad.dg237

 

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Title assembled transcript sequences
Downloaded 48 times
Description Final contigs from the assembly, minimum 100 bp. The names correspond to the specific transcript builds, where contig_id is the contig identifier, for example, avdl_parai-20111027|1234. Possibly includes UTRs. Sequences contain IUPAC ambiguity codes representing ambiguous bases (http://www.bioinformatics.org/sms/iupac.html).
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Title predicted protein sequences
Downloaded 37 times
Description Protein products predicted by ESTScan, minimum 30 aa. Sequence identifiers for these predicted products correspond to the associated nucleotide sequence in file assembled transcript sequences.txt, and are provided suffixes _0, _1, etc., to accommodate multiple predictions.
Download predicted protein sequences.txt (8.072 Mb)
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When using this data, please cite the original publication:

Pravosudov VV, Roth II TC, Forister ML, LaDage LD, Kramer R, Schilkey F, van der Linden AM (2012) Differential hippocampal gene expression is associated with climate-related natural variation in memory and the hippocampus in food-caching chickadees. Molecular Ecology 22(2): 397-408. http://dx.doi.org/10.1111/mec.12146

Additionally, please cite the Dryad data package:

Pravosudov VV, Roth II TC, Forister ML, LaDage LD, Kramer R, Schilkey F, van der Linden AM (2012) Data from: Differential hippocampal gene expression is associated with climate-related natural variation in memory and the hippocampus in food-caching chickadees. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.dg237
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