Data from: Conservation implications of the evolutionary history and genetic diversity hotspots of the snowshoe hare

Cheng E, Hodges KE, Melo-Ferreira J, Alves PC, Mills LS

Date Published: May 13, 2014

DOI: http://dx.doi.org/10.5061/dryad.dh63p

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Cheng et al_All Samples
Downloaded 47 times
Description Sample details for 907 specimens of snowshoe hare (Lepus americanus) and 5 specimens of black-tailed jackrabbit (L. californicus) used in study. Includes collection date, latitude-longitude, and GenBank accession numbers (where relevant).
Download Cheng et al_All Samples.xlsx (99.79 Kb)
Details View File Details
Title Cheng et al_microsatellites
Downloaded 32 times
Description Microsatellite genotype data for 853 specimens of snowshoe hare (Lepus americanus) at eight microsatellite loci
Download Cheng et al_microsatellites.xlsx (95.99 Kb)
Details View File Details
Title Cheng et al_STRUCTUREinput
Downloaded 11 times
Description STRUCTURE input file with microsatellite genotype date for 853 specimens of snowshoe hare (Lepus americanus)
Download Cheng et al_STRUCTUREinput.txt (107.5 Kb)
Details View File Details
Title Cheng et al_BEASTinputCytB
Downloaded 6 times
Description Fasta input file for BEAST phylogenetic analysis, based on the CytB gene. Sequences are provided for 80 snowshoe hare (Lepus americanus) specimens collected from throughout the species’ range, 1 white-tailed jackrabbit (L. townsendii: Sample ID WJ1, GenBank accession number AY292729), and 7 black-tailed jackrabbits (L. californicus: Sample ID’s BJ1, BJ2, CA.933J, CA.939J, NM.978J, NV.981J, NV.988J). Sequences for two of the black-tailed jackrabbit specimens were from GenBank, with these accession numbers: BJ1 = AY292731 and BJ2 = HM222712.
Download Cheng et al_BEASTinputCytB.fasta (61.32 Kb)
Details View File Details
Title Cheng et al_BEASTinputCR
Downloaded 8 times
Description Fasta input file of control region (d-loop), for inferring demographic history of the major mtDNA lineages, using the Bayesian Skyline Plot implemented in BEAST. Sequences are provided for 893 snowshoe hare (Lepus americanus) specimens collected from throughout the species’ range and 1 white-tailed jackrabbit (L. townsendii: Sample ID WTJR, GenBank accession number AY292729).
Download Cheng et al_BEASTinputCR.fasta (427.9 Kb)
Details View File Details

When using this data, please cite the original publication:

Cheng E, Hodges KE, Melo-Ferreira J, Alves PC, Mills LS (2014) Conservation implications of the evolutionary history and genetic diversity hotspots of the snowshoe hare. Molecular Ecology 23(12): 2929-2942. http://dx.doi.org/10.1111/mec.12790

Additionally, please cite the Dryad data package:

Cheng E, Hodges KE, Melo-Ferreira J, Alves PC, Mills LS (2014) Data from: Conservation implications of the evolutionary history and genetic diversity hotspots of the snowshoe hare. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.dh63p
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: