Data from: Deep COI sequencing of standardized benthic samples unveils overlooked diversity of Jordanian coral reefs in the Northern Red Sea

Al-Rshaidat MMD, Snider A, Rosebraugh S, Devine AM, Devine TD, Plaisance L, Knowlton N, Leray M

Date Published: July 21, 2016

DOI: http://dx.doi.org/10.5061/dryad.dh88c

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title IonXpress_009_R_2013_05_26_04_37_58_user_SN2-40-MatthieuSampleA_barcodes7-8-9_Auto_user_SN2-40-MatthieuSampleA_barcodes7-8-9_61
Downloaded 7 times
Description Raw amplicon sequence (mtCOI) data obtained on the Ion Torrent platform (Thermo Fisher Scientific).
Download IonXpress_009_R_2013_05_26_04_37_58_user_S...fastq (399.1 Mb)
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Title IonXpress_016_R_2013_03_29_20_58_02_user_SN2-4-MarineGeo_J_K_L_Auto_user_SN2-4-MarineGeo_J_K_L_31
Downloaded 6 times
Description Raw amplicon sequence (mtCOI) data obtained on the Ion Torrent platform (Thermo Fisher Scientific).
Download IonXpress_016_R_2013_03_29_20_58_02_user_S...fastq (489.2 Mb)
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Title Jordan_Metabarcode_OTUtable
Downloaded 6 times
Description This table summarize the number of sequences per Operational Taxonomic Units (OTU) and per sample. OTUs were considered matched to a reference barcode when the level of similarity of the Blast search was higher than 97%. In the absence of direct match, the Bayesian phylogenetic approach implemented in the Statistical Assignment Package (Munch et al. 2008) was used for taxonomic assignment. The description of each sample can be found in Table S2 of the manuscript.
Download Jordan_Metabarcode_OTUtable.xlsx (466.0 Kb)
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When using this data, please cite the original publication:

Al-Rshaidat MMD, Snider A, Rosebraugh S, Devine AM, Devine TD, Plaisance L, Knowlton N, Leray M (2016) Deep COI sequencing of standardized benthic samples unveils overlooked diversity of Jordanian coral reefs in the Northern Red Sea. Genome 59(9): 724-737. http://dx.doi.org/10.1139/gen-2015-0208

Additionally, please cite the Dryad data package:

Al-Rshaidat MMD, Snider A, Rosebraugh S, Devine AM, Devine TD, Plaisance L, Knowlton N, Leray M (2016) Data from: Deep COI sequencing of standardized benthic samples unveils overlooked diversity of Jordanian coral reefs in the Northern Red Sea. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.dh88c
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