Data from: New resources for genetic studies in Populus nigra: genome wide SNP discovery and development of a 12k Infinium array

Faivre Rampant P, Zaina G, Jorge V, Giacomello S, Segura V, Scalabrin S, Guérin V, De Paoli E, Aluome C, Viger M, Cattonaro F, Payne A, PaulStephenRaj P, Le Paslier M, Berard A, Allwright MR, Villar M, Taylor G, Bastien C, Morgante M

Date Published: January 29, 2016

DOI: http://dx.doi.org/10.5061/dryad.dk6gj.2

 

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Title List of SNPs extracted from HT-sequencing data
Downloaded 21 times
Description The SNPs are denoted by SNP_IGA followed by the chromosome or scaffold number (V2.0) and the base position within the scaffold.
Download List of SNPs from HTsequencing data.xlsx (9.150 Mb)
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Title P. nigra Genotype data
Downloaded 42 times
Description Genotype calling of P. nigra individuals originating from 12 western european river basins and full sib progenies. The individuals are listed in Tables S1
Download P. nigra Genotype data.xlsx (28.27 Mb)
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Title Input files for ADMIXTURE and PCA
Downloaded 55 times
Description Input files for ADMIXTURE and PCA analysis see Material and methods section
Download Input files for ADMIXTURE and PCA.zip (2.891 Mb)
Download README.docx (21.62 Kb)
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Title P. nigra reference sequence
Downloaded 35 times
Description This .zip file contains the fasta-formatted and compressed complete sequence of Populus nigra genotype 71077-308.
Download Consensus_71077-308_version0915-MER.fa.zip (99.78 Mb)
Download README.txt (885 bytes)
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When using this data, please cite the original publication:

Faivre Rampant P, Zaina G, Jorge V, Giacomello S, Segura V, Scalabrin S, Guérin V, De Paoli E, Aluome C, Viger M, Cattonaro F, Payne A, PaulStephenRaj P, Le Paslier M, Berard A, Allwright MR, Villar M, Taylor G, Bastien C, Morgante M (2016) Data New resources for genetic studies in Populus nigra: genome wide SNP discovery and development of a 12k Infinium array. Molecular Ecology Resources 14(4): 1023-1036. http://dx.doi.org/10.1111/1755-0998.12513

Additionally, please cite the Dryad data package:

Faivre Rampant P, Zaina G, Jorge V, Giacomello S, Segura V, Scalabrin S, Guérin V, De Paoli E, Aluome C, Viger M, Cattonaro F, Payne A, PaulStephenRaj P, Le Paslier M, Berard A, Allwright MR, Villar M, Taylor G, Bastien C, Morgante M (2016) Data from: New resources for genetic studies in Populus nigra: genome wide SNP discovery and development of a 12k Infinium array. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.dk6gj.2
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