Data from: Specific alleles at immune genes, rather than genome-wide heterozygosity, are related to immunity and survival in the critically endangered Attwater's prairie-chicken

Bateson ZW, Hammerly SC, Johnson JA, Morrow ME, Whittingham LA, Dunn PO

Date Published: August 25, 2016

DOI: http://dx.doi.org/10.5061/dryad.dm437.2

 

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Title Read Me file for the immune response data file
Downloaded 3 times
Description Describes variables and models used to test the relationship between immune assays and genetic variation
Download READ ME for immune response analyses.txt (1.703 Kb)
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Title APC_immune_response_for_Dryad
Downloaded 1 time
Description Immune response and genetic data for 144 birds. For an explanation see "Read Me File for immune response data file"
Download APC_immune_response_for_Dryad.csv (22.27 Kb)
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Title R code for APC survival analyses
Downloaded 4 times
Description R scripts to analyze survival of prairie-chickens (Table 2 in manuscript)
Download R code for APC survival analyses.txt (1.702 Kb)
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Title APCcoxme input (n=116)
Downloaded 4 times
Description Input data file for analysis of survival (using the R scripts in the file "R code for APC survival analyses.txt")
Download APCcoxme_input.csv (12.70 Kb)
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Title Johnson_2787X
Downloaded 1 time
Description FASTA file of reads from first 454 pyrosequencing run
Download Johnson_2787X.fna (64.54 Mb)
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Title Johnson_2821X
Downloaded 2 times
Description FASTA file of reads from second run of 454 pyrosequencing
Download Johnson_2821X.fna (152.7 Mb)
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Title Barcode key for raw 454 reads
Downloaded 6 times
Description Excel file with key to Barcodes of individuals in the 454 pyrosequencing files
Download Barcode key for raw 454 reads.xlsx (26.61 Kb)
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Title MHC_I_counts_per_indiv
Downloaded 4 times
Description Summary of the alleles and reads for each individual at MHC class I (Excel file)
Download MHC_I_counts_per_indiv.xlsx (18.40 Kb)
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Title MHC_II_counts_per_indiv
Downloaded 5 times
Description Summary of the alleles and reads for each individual at MHC class II
Download MHC_II_counts_per_indiv.xlsx (15.77 Kb)
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When using this data, please cite the original publication:

Bateson ZW, Hammerly SC, Johnson JA, Morrow ME, Whittingham LA, Dunn PO (2016) Specific alleles at immune genes, rather than genome-wide heterozygosity, are related to immunity and survival in the critically endangered Attwater's prairie-chicken. Molecular Ecology 25(19): 4730-4744. http://dx.doi.org/10.1111/mec.13793

Additionally, please cite the Dryad data package:

Bateson ZW, Hammerly SC, Johnson JA, Morrow ME, Whittingham LA, Dunn PO (2016) Data from: Specific alleles at immune genes, rather than genome-wide heterozygosity, are related to immunity and survival in the critically endangered Attwater's prairie-chicken. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.dm437.2
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