Data from: Hierarchical structure of ecological and non-ecological processes of differentiation shaped ongoing gastropod radiation in the Malawi Basin

Van Bocxlaer B

Date Published: August 7, 2017

DOI: https://doi.org/10.5061/dryad.dn58p

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Title Environmental data at sampling localities
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Description [primary data file] This file contains information on five environmental variables documented at the studied sample localities
Download LanistesEnvData.txt (507 bytes)
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Title Results of BayeScan
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Description [output file] This file contains the results of the BayeScan analysis. This output file has been used to identify loci that are putatively under selection.
Download BayeScan_Output_fst.txt (9.905 Kb)
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Title Raw amplified fragment length polymorphism dataset (NA = 9)
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Description [primary data file] This file contains the raw AFLP dataset with NA’s coded as '9'.
Download gen_morph_pop_nine.txt (78.02 Kb)
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Title Raw amplified fragment length polymorphism dataset (NA = ?)
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Description [primary data file] This file contains the raw AFLP dataset with NA’s coded as ‘?’.
Download gen_morph_pop_questionmark.txt (78.02 Kb)
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Title Information on genetic diversity
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Description [output file] This file contains results from analysis of the AFLP dataset with AFLPsurv. Some of the tests reported in the paper have been performed on this output file.
Download AFLPsurv-geneticdiversity.txt (977 bytes)
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Title Population pairwise Fst data
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Description [output file] This file contains results from analysis of the AFLP dataset with AFLPsurv. These results have been used as input for the Fst-Pst comparisons.
Download AFLPsurv-PopPairwiseFST.txt (3.073 Kb)
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Title 1000 Bootstrap replicates on Population pairwise Fsts
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Description [output file] This file contains results from analysis of the AFLP dataset with AFLPsurv. These results have been used to calculate 95 % confidence intervals on the Population pairwise Fst data.
Download LanistesAFLPsurv_pairwiseFSTreplicates.txt (2.436 Mb)
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Title Geometric morphometric dataset
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Description [primary data file] This file contains information on individual specimens and the coordinates from semilandmark morphometrics after Procrustes superimposition and semilandmark alignment with perpendicular projection. This dataset has been used as the dataset for all subsequent morphometric analyses including ordination and the calculation of population pairwise Psts.
Download LanistesAFLP-MorphometricCoordsCS.txt (175.7 Kb)
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Title Pst summary statistics (from 1000 bootstraps)
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Description [output file] These summary statistics have been calculated from 1000 bootstrap replicates of the geometric morphometric dataset and subsequent Pst calculations. These summary statistics are used for Fst-Pst comparisons.
Download PST_1000BootstrapReplicates.txt (205.4 Kb)
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Title Fst summary statistics (from 1000 bootstraps)
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Description [output file] These summary statistics have been calculated from 1000 bootstrap replicates of AFLPsurv. These summary statistics are used for Fst-Pst comparisons.
Download FST_95CIfromBootstrappingAFLPsurv.txt (4.546 Kb)
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Title Data for Fst-Pst comparisons
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Description [input file] This file contains the compiled data from Pst and Fst calculations in an organized format to do Fst-Pst comparisons.
Download PstFst-comparisondataFinal.txt (11.43 Kb)
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Title Input for analyses with SPAGeDi (Basin-wide)
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Description [input file] This file is the file used to do basin-wide analyses with SPAGeDi.
Download Lanistes_spagedi_Final.txt (81.00 Kb)
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Title Input for analyses with SPAGeDi (Northern region)
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Description [input file] This file is the file used to do SPAGeDi-analyses on populations from the northern region.
Download Lan_north_spagedi_Final.txt (44.88 Kb)
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Title Input for analyses with SPAGeDi (Southern region)
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Description [input file] This file is the file used to do SPAGeDi-analyses on populations from the southern region.
Download Lan_south_spagedi_Final.txt (38.06 Kb)
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Title SPAGeDI output summary for Fi = 0.0
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Description [output file] This file summarizes the results of basin-wide and regional analyses with SPAGeDi under an inbreeding coefficient Fi = 0.0 (thus under Hardy-Weinberg equilibrium).
Download kinship-distance_matrix_HW_Fi0_0.txt (2.734 Kb)
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Title SPAGeDI output summary for Fi = 0.2
Description [output file] This file summarizes the results of basin-wide and regional analyses with SPAGeDi under an inbreeding coefficient Fi = 0.2.
Download kinship-distance_matrix_Fi0_2.txt (2.777 Kb)
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Title SPAGeDI output summary for Fi = 0.4
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Description [output file] This file summarizes the results of basin-wide and regional analyses with SPAGeDi under an inbreeding coefficient Fi = 0.4.
Download kinship-distance_matrix_Fi0_4.txt (2.762 Kb)
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Title SPAGeDI output summary for Fi = 0.6
Description [output file] This file summarizes the results of basin-wide and regional analyses with SPAGeDi under an inbreeding coefficient Fi = 0.6.
Download kinship-distance_matrix_Fi0_6.txt (2.749 Kb)
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When using this data, please cite the original publication:

Van Bocxlaer B (2017) Hierarchical structure of ecological and non-ecological processes of differentiation shaped ongoing gastropod radiation in the Malawi Basin. Proceedings of the Royal Society B 284(1862): 20171494. https://doi.org/10.1098/rspb.2017.1494

Additionally, please cite the Dryad data package:

Van Bocxlaer B (2017) Data from: Hierarchical structure of ecological and non-ecological processes of differentiation shaped ongoing gastropod radiation in the Malawi Basin. Dryad Digital Repository. https://doi.org/10.5061/dryad.dn58p
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