Data from: TNL genes in peach: insights into the post-LRR domain

Van Ghelder C, Esmenjaud D

Date Published: April 27, 2016

DOI: http://dx.doi.org/10.5061/dryad.dp20h

 

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Title Full list of 103 trimmed sequences of the PL domain.
Downloaded 5 times
Description These 103 Post LRR predicted peptide sequences have been trimmed and used to build the alignement and the phylogenic tree. Fasta format - use text editor
Download PJ1 seqPLalignement final.fas (20.66 Kb)
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Title Alignment of the 103 PL sequences
Downloaded 3 times
Description This alignment file contains the 103 sequences of Post LRR (PL) domains used to build the phylogenic tree. Mega format - Use MEGA 6 to edit it.
Download PJ4 PLsequences alignement for Tree.meg (27.28 Kb)
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Title Phylogenic tree of PL domains in peach
Downloaded 2 times
Description Maximum Likelihood Phylogenetic analysis of the PL sequences from predicted TNL peptides in peach genome. Itwas constructed with MEGA6 using Maximum Likelihood method with 100 Bootstrap replications and the Jones-Taylor-Thornton model. Newick format - use Mega 6 to edit it
Download PJ5 Phylogenic tree of PL.nwk (4.539 Kb)
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Title TNL sequences in peach
Downloaded 3 times
Description This archive contains sequences of TNLs in the peach genome. PJ6 is the predicted peptides fasta file, PJ7 is the predicted mRNA fasta file and PJ8 is the predicted gene fasta file.
Download TNL sequences in peach.zip (510.4 Kb)
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Title Fgenesh TNL transcripts predictions
Downloaded 3 times
Description This archive groups the TNL genes predictions within the peach genome made with the sofware Fgenesh. These files are only illustrative - pdf format
Download PJ2 predictions Fgenesh.zip (2.130 Mb)
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Title Alignement gene-predictedmRNA in v2.0
Downloaded 3 times
Description This archive file contains the alignments between gene and predicted mRNA for all TNLs in the peach genome v2.0. Muscle/Clustal format - use text edit
Download PJ3 Muscle Alignement gene-predictedmRNA v2.0.zip (485.5 Kb)
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When using this data, please cite the original publication:

Van Ghelder C, Esmenjaud D (2016) TNL genes in peach: insights into the post-LRR domain. BMC Genomics 17: 317. http://dx.doi.org/10.1186/s12864-016-2635-0

Additionally, please cite the Dryad data package:

Van Ghelder C, Esmenjaud D (2016) Data from: TNL genes in peach: insights into the post-LRR domain. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.dp20h
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