Data from: Genetic heterogeneity underlying variation in a locally adaptive clinal trait in Pinus sylvestris revealed by a Bayesian multipopulation analysis

Kujala ST, Knürr T, Kärkkäinen K, Neale DB, Sillanpää MJ, Savolainen O

Date Published: October 25, 2016

DOI: http://dx.doi.org/10.5061/dryad.dv413.2

 

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Title Phenotype data
Downloaded 4 times
Description Phenotype data for 274 half-sib families used in association analysis (except entries 137,161,196; see Gibbs sampler file). Includes the following columns: a. TREE: identifier for individual mother trees b. METLA: alternative identifier c. POP: population identifier d. BUDSET: BLUP-estimate of breeding value of TREE (from mixed model) e. LATITUDE: latitude of origin f. POPMEAN: estimate of population mean (from mixed model).
Download phenotype.txt (13.25 Kb)
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Title Genotype scores
Downloaded 8 times
Description Corrected genotype scores (see manuscript for details) for 271 half-sib families in 351 SNPs. 271 entries are in same order as in phenotype data file (with entries 137, 161 and 196 missing).
Download markerscorr.Rdata (61.15 Kb)
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Title R script for MCMC simulation
Downloaded 7 times
Description R script to run MCMC simulation for the association analysis.
Download GIBBSinC.R (1.437 Kb)
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Title Gibbs sampler
Downloaded 5 times
Description Gibbs sampler in a C-language module implemented as an extension to R.
Download gibbsB.c (6.395 Kb)
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Title Dynamic link library
Downloaded 2 times
Description The module above (Gibbs sampler) compiled as a dynamic link library (As this is platform-specific, the above module may have to be compiled again. See R documentation for how to do this).
Download gibbsB.dll (8.704 Kb)
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Title R script for permutation
Downloaded 7 times
Download RESAMPLE.R (1.956 Kb)
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When using this data, please cite the original publication:

Kujala ST, Knürr T, Kärkkäinen K, Neale DB, Sillanpää MJ, Savolainen O (2017) Genetic heterogeneity underlying variation in a locally adaptive clinal trait in Pinus sylvestris revealed by a Bayesian multipopulation analysis. Heredity 118(5): 413-423. http://dx.doi.org/10.1038/hdy.2016.115

Additionally, please cite the Dryad data package:

Kujala ST, Knürr T, Kärkkäinen K, Neale DB, Sillanpää MJ, Savolainen O (2016) Data from: Genetic heterogeneity underlying variation in a locally adaptive clinal trait in Pinus sylvestris revealed by a Bayesian multipopulation analysis. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.dv413.2
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