Data from: Parallel tagged next-generation sequencing on pooled samples – a new approach for population genetics in ecology and conservation

 

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Title 16S_reference
Downloaded 22 times
Description 16S reference generated as consensus sequences from the Leiopelma hochstetteri 16S sequences available in GenBank.
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Title CytB_reference
Downloaded 30 times
Description Cyt b reference generated as consensus sequences from the Leiopelma hochstetteri Cyt b sequences available in GenBank
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Title Table1
Downloaded 70 times
Description Sample details of Leiopelma hochstetteri individuals used in the pooled samples next-generation sequencing (NGS) approach. For each sample species, sampling location, population number, sample number, Cyt b Genbank accession number, 16S Genbank accession number and geographical coordinates of the sampling location are provided. This table corresponds to a modified supplementary material that is available with the online version of the article Fouquet et al. 2010, Conservation Genetics, 11, 907-919 (doi:10.1007/s10592-009-9935-8). Accession numbers in bold indicate unsuccessful PCR amplifications for the given locus and individual. Note that the sequences deposited in the Genbank under these accession numbers are sequences generated by Sanger sequencing in the study of Fouquet et al. 2010.
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Title Pop1
Downloaded 18 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 1. Individuals that belong to population-pool 1 are listed in Table 1.
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Title Pop2
Downloaded 12 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 2. Individuals that belong to population-pool 2 are listed in Table 1.
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Title Pop3
Downloaded 16 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 3. Individuals that belong to population-pool 3 are listed in Table 1.
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Title Pop4
Downloaded 17 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 4. Individuals that belong to population-pool 4 are listed in Table 1.
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Title Pop5
Downloaded 9 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 5. Individuals that belong to population-pool 5 are listed in Table 1.
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Title Pop6
Downloaded 12 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 6. Individuals that belong to population-pool 6 are listed in Table 1.
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Title Pop7
Downloaded 14 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 7. Individuals that belong to population-pool 7 are listed in Table 1.
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Title Pop8
Downloaded 10 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 8. Individuals that belong to population-pool 8 are listed in Table 1.
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Title Pop9
Downloaded 17 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 9. Individuals that belong to population-pool 9 are listed in Table 1.
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Title Pop10
Downloaded 13 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 10. Individuals that belong to population-pool 10 are listed in Table 1.
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Title Pop11
Downloaded 16 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 11. Individuals that belong to population-pool 11 are listed in Table 1.
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Title Pop12
Downloaded 9 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 12. Individuals that belong to population-pool 12 are listed in Table 1.
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Title Pop13
Downloaded 9 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 13. Individuals that belong to population-pool 13 are listed in Table 1.
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Title Pop14
Downloaded 17 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 14. Individuals that belong to population-pool 14 are listed in Table 1.
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Title Pop15
Downloaded 14 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 15. Individuals that belong to population-pool 15 are listed in Table 1.
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Title Pop16
Downloaded 11 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 16. Individuals that belong to population-pool 16 are listed in Table 1.
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Title Pop17
Downloaded 11 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 17. Individuals that belong to population-pool 17 are listed in Table 1.
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Title Pop18
Downloaded 11 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 18. Individuals that belong to population-pool 18 are listed in Table 1.
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Title Pop19
Downloaded 14 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 19. Individuals that belong to population-pool 19 are listed in Table 1.
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Title Pop20
Downloaded 11 times
Description Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 20. Individuals that belong to population-pool 20 are listed in Table 1.
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When using this data, please cite the original publication:

Zavodna M, Grueber CE, Gemmell NJ (2013) Parallel tagged next-generation sequencing on pooled samples – a new approach for population genetics in ecology and conservation. PLoS ONE 8(4): e61471. http://dx.doi.org/10.1371/journal.pone.0061471

Additionally, please cite the Dryad data package:

Zavodna M, Grueber CE, Gemmell NJ (2013) Data from: Parallel tagged next-generation sequencing on pooled samples – a new approach for population genetics in ecology and conservation. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.f058c
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