Data from: Genomic regions with a history of divergent selection affect fitness of hybrids between two butterfly species

Gompert Z, Lucas LK, Nice CC, Fordyce JA, Forister ML, Buerkle CA

Date Published: January 19, 2012

DOI: http://dx.doi.org/10.5061/dryad.f0b2f083

 

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Title Sequence allele counts
Downloaded 33 times
Description Allele counts form indiviudal-based Illumina sequence data for Lycaeides butterflies. This file contains counts of the number of times each allele was observed for each locus and individual. Each locus begins with a line with the contig number and location (in bp) in the reference genome. This is followed by a single line per individual with the individuals name, the number of times the reference allele was observed (i.e., how many reads included the reference allele), and the number of times the alternative allele (i.e., nucleotide) was observed. This file contains 119,677 loci.
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Title Reference sequence
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Description This is the fasta formatted reference sequence used for the reference-based assembly. This reference was generated by concatenating short (~92 bp) contigs from a de novo assembly and separating these sequences with 30 'N' characters.
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Title Source code for allele frequency estimation with genotype uncertainty
Downloaded 28 times
Description This compressed directory contains the source code for the allele frequency model described in the publication. Please contact the Zach Gompert (zgompert@uwyo.edu) to inquire about updates to the software, usage, and whether a manual or example files exist.
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Title Source code for Bayesian F-model
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Description This compressed directory contains the source code for the Bayesian F-model described in the publication. Please contact the Zach Gompert (zgompert@uwyo.edu) to inquire about updates to the software, usage, and whether a manual or example files exist.
Download f-modSource.tar.gz (9.238 Kb)
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Title Source code for composite disequilibrium
Downloaded 20 times
Description This compressed directory contains the source code for estimating Burrow's composite linkage and Hardy-Weinberg disequilibrium, as described in the publication. Please contact the Zach Gompert (zgompert@uwyo.edu) to inquire about updates to the software, usage, and whether a manual or example files exist.
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When using this data, please cite the original publication:

Gompert Z, Lucas LK, Nice CC, Fordyce JA, Forister ML, Buerkle CA (2012) Genomic regions with a history of divergent selection affect fitness of hybrids between two butterfly species. Evolution 66(7): 2167-2181. http://dx.doi.org/10.1111/j.1558-5646.2012.01587.x

Additionally, please cite the Dryad data package:

Gompert Z, Lucas LK, Nice CC, Fordyce JA, Forister ML, Buerkle CA (2012) Data from: Genomic regions with a history of divergent selection affect fitness of hybrids between two butterfly species. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.f0b2f083
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