Data from: Reef-specific patterns of gene expression plasticity in eastern oysters (Crassostrea virginica)

Eierman LE, Hare MP

Date Published: July 9, 2015

DOI: http://dx.doi.org/10.5061/dryad.f6m02

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title FASTA Sequences for the Annotated Reference Transcriptome of the Eastern Oyster
Downloaded 11 times
Description The FASTA file consists of the annotated reference transcriptome cDNA sequences used to map sample reads. The reference transciprtome was generated by collapsing two previously published transcriptomes (Eierman and Hare 2014, Zhang et al. 2014) using Cd-hit-est (Li and Godzik 2006) as described in the publication (Eierman and Hare 2015).
Download Eierman_Hare_2015_JOH_Transcriptome_Sequen...fasta (47.43 Mb)
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Title Annotation File for the Annotated Reference Transcriptome of the Eastern Oyster
Downloaded 16 times
Description The Excel file provides the annotation information, including original source transcriptome, for each contig in the reference transcriptome. The ReadMe files describes the content of each Excel file column.
Download Eierman_Hare_2015_JOH_Transcriptome_Annota....xlsx (3.498 Mb)
Download README.txt (1.425 Kb)
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Title Filtered, mapped RNA-seq reads from eastern oysters in merged bam file
Downloaded 15 times
Description The file is a merged bam file. It contains the reads that mapped to the annotated reference transcriptome for all 24 sample oysters. The ReadMe file indicates that source population and treatment salinity for each sample oyster.
Download All_samples_JOH_Eierman_Hare.bam (31.66 Gb)
Download README.txt (1.048 Kb)
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When using this data, please cite the original publication:

Eierman LE, Hare MP (2015) Reef-specific patterns of gene expression plasticity in eastern oysters (Crassostrea virginica). Journal of Heredity 107(1): 90-100. http://dx.doi.org/10.1093/jhered/esv057

Additionally, please cite the Dryad data package:

Eierman LE, Hare MP (2015) Data from: Reef-specific patterns of gene expression plasticity in eastern oysters (Crassostrea virginica). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.f6m02
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