Data from: The genetic architecture of reproductive isolation during speciation-with-gene-flow in lake whitefish species pairs assessed by RAD sequencing

 

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Title Genotypes_5_Lakes_3438_Markers
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Description Genotypes at 3438 RAD markers (in Arlequin format), for 195 individual collected in 5 lakes. Each lake comprises a dwarf and a normal whitefish sample.
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Title 5_Lakes_Mapped_2734_FST
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Description Mapped FST values (dwarf/normal) for 2734 polymorphic RAD markers in each lake.
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Title Genomic_Islands
Downloaded 6 times
Description R code to perform regressions of 90th percentile value of FST as a function of genetic distance from the center of the genomic islands of differentiation. For each lake, the table "Lake_Island_Group.txt" combines FST values at increasing recombination distances (Pos) from the reference position. Map distances were binned into discrete classes (Int) to perform regressions.
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Title Inferred_haplotypes
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Description Individual haplotypes for each linkage group as inferred from fastPHASE. subpop1=CliffD, subpop2=CliffN, subpop3=IndianD, subpop4=IndianN, subpop5=WebsterD, subpop6=WebsterN, subpop7=EastD, subpop8=EastN, subpop9=TemiscouataD, subpop10=TemiscouataN,
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When using this data, please cite the original publication:

Gagnaire P, Pavey SA, Normandeau E, Bernatchez L (2013) The genetic architecture of reproductive isolation during speciation-with-gene-flow in lake whitefish species pairs assessed by RAD sequencing. Evolution 67(9): 2483-2497. http://dx.doi.org/10.1111/evo.12075

Additionally, please cite the Dryad data package:

Gagnaire P, Pavey SA, Normandeau E, Bernatchez L (2013) Data from: The genetic architecture of reproductive isolation during speciation-with-gene-flow in lake whitefish species pairs assessed by RAD sequencing. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.f7125
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