Data from: Diverse phenotypic and genetic responses to short-term selection in evolving Escherichia coli populations

Dillon MM, Rouillard NP, Van Dam B, Gallet R, Cooper VS

Date Published: January 21, 2016

DOI: http://dx.doi.org/10.5061/dryad.f7p18

 

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Title Supplementary Dataset 1: Data summary of alternative fitness metrics
Downloaded 6 times
Description Summary of raw cell counts for the reference strain (Nai, Naf) and the mutant (Nbi, Nbf) at the beginning and end of each competition, along with calculations of growth rate difference between the two strains (Δrab), number of generations elapsed by the reference strain (G), selection coefficients (s), and Malthusian fitness (w). Raw cell counts at the end of the competition are multiplied by 106 to account for three days of 1:100 dilution and growth, but selection coefficients and Malthusian fitness are not corrected for the marker effect, as was the case for the Malthusian fitness data presented in the main text.
Download SupplementaryDataset1.xlsx (136.6 Kb)
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Title SupplementaryDataset2: Summary of mutation identification and filtering
Downloaded 7 times
Description Summary of all putative mutations derived from REL606 and REL1206 that were identified by breseq prior to manual filtration. Mutations that passed our manual filtration criteria are highlighted using bolded text and the justification for discarding all of the remaining mutations is presented in each respective row.
Download SupplementaryDataset2.xlsx (55.37 Kb)
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When using this data, please cite the original publication:

Dillon MM, Rouillard NP, Van Dam B, Gallet R, Cooper VS (2016) Diverse phenotypic and genetic responses to short-term selection in evolving Escherichia coli populations. Evolution 70(3): 586–599. http://dx.doi.org/10.1111/evo.12868

Additionally, please cite the Dryad data package:

Dillon MM, Rouillard NP, Van Dam B, Gallet R, Cooper VS (2016) Data from: Diverse phenotypic and genetic responses to short-term selection in evolving Escherichia coli populations. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.f7p18
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