Data from: Development of diagnostic microsatellite markers from whole-genome sequences of Ammodramus sparrows for assessing admixture in a hybrid zone

Kovach AI, Walsh J, Ramsdell J, Thomas WK

Date Published: May 15, 2015

DOI: http://dx.doi.org/10.5061/dryad.f8m84

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title SparrowGenotypes
Downloaded 9 times
Description Genotypes at 12 diagnostic microsatellite loci of 96 Ammodramus caudacutus and A. nelsoni. Sparrows were sampled from sympatric and allopatric populations.
Download SparrowGenotypes.xlsx (62.98 Kb)
Download README.txt (1.494 Kb)
Details View File Details
Title SimulatedGenotypes
Downloaded 6 times
Description Genotypes, simulated in HYBRIDLAB, at 12 diagnostics microsatellite loci for six genotypic classes of Ammodramus sparrows: pure caudacutus, backcrossed caudacutus, F1, F2, backcrossed nelsoni, and pure nelsoni.
Download SimulatedGenotypes.xlsx (102.9 Kb)
Download README.txt (1.494 Kb)
Details View File Details
Title Assembled N50 contigs Ammodramus caudacutus
Downloaded 3 times
Description Fasta file of assembled contigs that were > the N50contig size of assembled Ammodramus caudacutus reads from Illumina sequencing.
Download README.txt (1.494 Kb)
Download SALS-2-29-2012-assembly.fasta (1.009 Gb)
Details View File Details
Title Assembled N50 contigs Ammodramus nelsoni
Downloaded 4 times
Description Fasta file of assembled contigs > than the N50 contig length for Illumina sequencing reads of Ammodramus nelsoni.
Download README.txt (1.494 Kb)
Download Nelson-3-26-2012-assembly.fasta (1.058 Gb)
Details View File Details

When using this data, please cite the original publication:

Kovach AI, Walsh J, Ramsdell J, Thomas WK (2015) Development of diagnostic microsatellite markers from whole-genome sequences of Ammodramus sparrows for assessing admixture in a hybrid zone. Ecology and Evolution 5(11): 2267–2283. http://dx.doi.org/10.1002/ece3.1514

Additionally, please cite the Dryad data package:

Kovach AI, Walsh J, Ramsdell J, Thomas WK (2015) Data from: Development of diagnostic microsatellite markers from whole-genome sequences of Ammodramus sparrows for assessing admixture in a hybrid zone. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.f8m84
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: