Data from: PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses.

Lanfear R, Calcott B, Ho SYW, Guindon S

Date Published: January 23, 2012

DOI: http://dx.doi.org/10.5061/dryad.fc30r431

 

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Title Table_3_Li_2008
Downloaded 104 times
Description This file contains all of the input and output files for table 3 in the paper. Including Li et al's alignment file, and partitioning files for all of the different schemes in table 3 of the paper. It also contains the mac-compiled version of RaxML that I used for the analysis, although any version of raxML should work.
Download Table_3_Li_2008.zip (646.4 Kb)
Download README.txt (345 bytes)
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Title Table_1_and_2_datasets
Downloaded 100 times
Description There are 10 subfolders, each of which contains a dataset and a partitionfinder.cfg file. The datasets are described in table 1 of the paper, and the results are in table 2. The files in the folders should reproduce all of the results in table 2. All analyses are were run with PartitionFinder v0.9. To download this particular version (which is guaranteed to work with these files, while later versions might not be) follow this link: <https://github.com/brettc/partitionfinder/zipball/v0.9>. Later versions of PartitionFinder are available here: <www.robertlanfear.com/partitionfinder>.
Download Table_1_and_2_datasets.zip (347.8 Kb)
Download README.txt (1.112 Kb)
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When using this data, please cite the original publication:

Lanfear R, Calcott B, Ho SYW, Guindon S (2012) PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution 29(6): 1695-1701. http://dx.doi.org/10.1093/molbev/mss020

Additionally, please cite the Dryad data package:

Lanfear R, Calcott B, Ho SYW, Guindon S (2012) Data from: PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.fc30r431
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