Data from: Whole transcriptome analysis reveals changes in expression of immune related genes during and after bleaching in a reef-building coral

Pinzón JH, Kamel B, Burge CA, Harvell CD, Medina M, Weil E, Mydlarz LD

Date Published: March 13, 2015

DOI: http://dx.doi.org/10.5061/dryad.fj276

 

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Title ESM1 Symbiodinium genomic data
Downloaded 31 times
Description Electronic supplementary material 1. Fasta file containing the Symbiodinium genomic data used to filter the Orbicella faveolata metatranscriptome. This file includes contigs from Symbiodinium types A, A3, B1 and C1. For further details on the A3 and C1 data contact Dr. Todd C. LaJeunesse at The Pennsylvania State University.
Download ESM1_Symbiodinium_genomic data.fasta (799.4 Mb)
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Title ESM2 Bleaching metatranscriptome transcriptome
Downloaded 12 times
Description Electronic supplementary material 2. Fasta file containing 442294 contigs of the assembled Orbicella faveolata metatranscriptome.
Download ESM2_Bleaching_Metatranscriptome_transcrip...fasta (460.1 Mb)
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Title ESM3 Bleaching "O. faveolata" transcriptome
Downloaded 22 times
Description Electronic supplementary material 3. Fasta file containing 178943 contigs that constitute the ‘Orbicella faveolata’ transcriptome.
Download ESM3_Bleaching_O-faveolata_transcriptome.fasta (234.1 Mb)
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Title ESM4 Bleaching "Symbiodinium spp." transcriptome
Downloaded 13 times
Description Electronic supplementary material 4. Fasta file containing 130217 contigs that constitute the ‘Symbiodinium spp.’ transcriptome.
Download ESM4_Bleaching_Symbiodinium-spp_transcript...fasta (177.5 Mb)
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Title ESM5 Bleaching "Other-eukaryotes" transcriptome
Downloaded 7 times
Description Electronic supplementary material 5. Fasta file containing 202236 contigs that constitute the ‘other-eukaryotes’ transcriptome.
Download ESM5_Bleaching_Other-eukaryotes_transcript...fasta (151.5 Mb)
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Title ESM6 Annotations metatranscriptome
Downloaded 25 times
Description Electronic supplementary material 6. Blast results for all genes found in the Orbicella faveolata metatranscriptome.
Download ESM6_Annotations_Metatranscriptome.txt (13.32 Mb)
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Title ESM7 Annotations of 1368 coral genes with different expression levels
Downloaded 12 times
Description Electronic supplementary material 7. List of 1368 genes from the ‘Orbicella faveolata’ transcriptome with significant differences in expression levels. Of the 1368 genes, 729 were annotated.
Download ESM7_Annotations_1368_coral_genes_w-diffe...on.txt (52.00 Kb)
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When using this data, please cite the original publication:

Pinzón JH, Kamel B, Burge CA, Harvell CD, Medina M, Weil E, Mydlarz LD (2015) Whole transcriptome analysis reveals changes in expression of immune related genes during and after bleaching in a reef-building coral. Royal Society Open Science 2(4): 140214. http://dx.doi.org/10.1098/rsos.140214

Additionally, please cite the Dryad data package:

Pinzón JH, Kamel B, Burge CA, Harvell CD, Medina M, Weil E, Mydlarz LD (2015) Data from: Whole transcriptome analysis reveals changes in expression of immune related genes during and after bleaching in a reef-building coral. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.fj276
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