Data from: Genome assembly and annotation of the medicinal plant Calotropis gigantea, a producer of anti-cancer and anti-malarial cardenolides

Hoopes GM, Hamilton JP, Kim J, Zhao D, Wiegert-Rininger K, Crisovan E, Buell CR

Date Published: December 13, 2017

DOI: https://doi.org/10.5061/dryad.fk41r

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title README.txt
Downloaded 7 times
Description README.txt
Download README.txt (1.658 Kb)
Details View File Details
Title CAL_genome_asm_v2.2_1000_rmscaff.fasta
Downloaded 10 times
Description Final genome assembly for C. gigantea
Download CAL_genome_asm_v2.2_1000_rmscaff.fasta (158.8 Mb)
Details View File Details
Title CAL_genome_asm_v2.2_1000_rmscaff_hard_masked.fasta
Downloaded 5 times
Description Final hard masked genome assembly for C. gigantea
Download CAL_genome_asm_v2.2_1000_rmscaff_hard_masked.fasta (160.4 Mb)
Details View File Details
Title CAL_genome_asm_v2.2_1000_rmscaff_soft_masked.fasta
Downloaded 4 times
Description Final soft masked genome assembly for C. gigantea
Download CAL_genome_asm_v2.2_1000_rmscaff_soft_masked.fasta (160.4 Mb)
Details View File Details
Title short_summary_asm_v2.2_1000.txt
Downloaded 2 times
Description Table summary of the number and percentage of Embryophyta orthologs for each category
Download short_summary_asm_v2.2_1000.txt (686 bytes)
Details View File Details
Title full_table_asm_v2.2_1000.tsv
Downloaded 4 times
Description Table providing the location in the genome assembly for each Embryophyta ortholog
Download full_table_asm_v2.2_1000.tsv (80.66 Kb)
Details View File Details
Title missing_busco_list_asm_v2.2_1000.tsv
Downloaded 2 times
Description List of missing Embryophyta orthologs from the genome assembly
Download missing_busco_list_asm_v2.2_1000.tsv (1.717 Kb)
Details View File Details
Title cal_hc_gene_models.rmscaff.gff3
Downloaded 6 times
Description Generic feature format (gff3) of high-confidence genes in C. gigantea
Download cal_hc_gene_models.rmscaff.gff3 (19.39 Mb)
Details View File Details
Title cal_hc_gene_models.rmscaff.cdna.fa
Downloaded 4 times
Description Transcript sequences (cDNA) of high-confidence genes in C. gigantea
Download cal_hc_gene_models.rmscaff.cdna.fa (33.50 Mb)
Details View File Details
Title cal_hc_gene_models.rmscaff.cds.fa
Downloaded 6 times
Description Coding sequences (CDS) of high-confidence genes in C. gigantea
Download cal_hc_gene_models.rmscaff.cds.fa (28.84 Mb)
Details View File Details
Title cal_hc_gene_models.rmscaff.pep.fa
Downloaded 5 times
Description Protein sequences of high-confidence genes in C. gigantea
Download cal_hc_gene_models.rmscaff.pep.fa (9.844 Mb)
Details View File Details
Title cal_hc_repr_gene_models.rmscaff.gff3
Downloaded 1 time
Description Generic feature format (gff3) of representative models for high-confidence genes in C. gigantea
Download cal_hc_repr_gene_models.rmscaff.gff3 (15.98 Mb)
Details View File Details
Title cal_hc_gene_models.rmscaff.repr.pep.fa
Downloaded 2 times
Description Protein sequences of representative models for high-confidence genes in C. gigantea
Download cal_hc_gene_models.rmscaff.repr.pep.fa (8.401 Mb)
Details View File Details
Title cal_hc_func_anno.txt
Downloaded 4 times
Description Functional annotation for high-confidence genes in C. gigantea
Download cal_hc_func_anno.txt (1.098 Mb)
Details View File Details
Title cal_FPKM_matrix.txt
Downloaded 5 times
Description Table with FPKM expression values for high-confidence genes in C. gigantea
Download cal_FPKM_matrix.txt (1.811 Mb)
Details View File Details

When using this data, please cite the original publication:

Hoopes GM, Hamilton JP, Kim J, Zhao D, Wiegert-Rininger K, Crisovan E, Buell CR (2017) Genome assembly and annotation of the medicinal plant Calotropis gigantea, a producer of anti-cancer and anti-malarial cardenolides. G3: Genes - Genomes - Genetics, online in advance of print. https://doi.org/10.1534/g3.117.300331

Additionally, please cite the Dryad data package:

Hoopes GM, Hamilton JP, Kim J, Zhao D, Wiegert-Rininger K, Crisovan E, Buell CR (2017) Data from: Genome assembly and annotation of the medicinal plant Calotropis gigantea, a producer of anti-cancer and anti-malarial cardenolides. Dryad Digital Repository. https://doi.org/10.5061/dryad.fk41r
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: