Data from: The Salmonella In Silico Typing Resource (SISTR): an open web-accessible tool for rapidly typing and subtyping draft Salmonella genome assemblies

Yoshida CE, Kruczkiewicz P, Laing CR, Lingohr EJ, Gannon VPJ, Nash JHE, Taboada EN

Date Published: February 1, 2016

DOI: http://dx.doi.org/10.5061/dryad.fk472

 

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Title 4330 Salmonella genome assemblies
Downloaded 20 times
Description 7-Zip archive of 4330 Salmonella genomes for validation of Salmonella In Silico Typing Resource (SISTR). Salmonella whole genome sequences used were obtained from the public repositories of WGS data at the National Center for Biotechnology Information (NCBI). These included fully assembled genomes from NCBI Assembly (http://www.ncbi.nlm.nih.gov/assembly/), and unassembled genomes downloaded from the NCBI SRA repository (http://www.ncbi.nlm.nih.gov/sra). Unassembled genomes were assembled using SPAdes (v3.1.1).
Download SISTR-4330-fastas.7z (2.186 Gb)
Download README.txt (96 bytes)
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Title cgMLST_330
Downloaded 33 times
Description 7-Zip archive of 330 cgMLST loci and multi-fasta files with existing alleles for each locus.
Download cgMLST_330.7z (2.370 Mb)
Download README.txt (96 bytes)
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When using this data, please cite the original publication:

Yoshida CE, Kruczkiewicz P, Laing CR, Lingohr EJ, Gannon VPJ, Nash JHE, Taboada EN (2016) The Salmonella In Silico Typing Resource (SISTR): an open web-accessible tool for rapidly typing and subtyping draft Salmonella genome assemblies. PLoS ONE 11(1): e0147101. http://dx.doi.org/10.1371/journal.pone.0147101

Additionally, please cite the Dryad data package:

Yoshida CE, Kruczkiewicz P, Laing CR, Lingohr EJ, Gannon VPJ, Nash JHE, Taboada EN (2016) Data from: The Salmonella In Silico Typing Resource (SISTR): an open web-accessible tool for rapidly typing and subtyping draft Salmonella genome assemblies. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.fk472
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