Data from: Influences of environmental and spatial factors on genetic and epigenetic variations in Rhododendron oldhamii (Ericaceae)

Huang C, Chen J, Tsang M, Chung J, Chang C, Hwang S

Date Published: December 29, 2014

DOI: http://dx.doi.org/10.5061/dryad.fm278

 

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Title R.oldhamii_AFLP and MSAP
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Description Here, we investigated the genetic and epigenetic variations and their ecological correlates in R. oldhamii. Genetic and epigenetic variations were surveyed using amplified fragment length polymorphism (AFLP) and methylation-sensitive amplification polymorphism (MSAP), respectively. For MSAP, we generated two binary matrices for analyses representing two informative patterns of methylation susceptible loci (i.e. MSAP-nonMeth for non-methylation and MSAP-Meth for methylation). In the MSAP-nonMeth dataset, the loci of methylation state (i) were coded with "1" and loci of methylation states (ii) and (iii) were coded with "0". Alternatively, the loci of methylation state (ii) were coded with "1" and loci of methylation states (i) and (iii) were coded with "0" in the MSAP-Meth dataset.
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When using this data, please cite the original publication:

Huang C, Chen J, Tsang M, Chung J, Chang C, Hwang S (2014) Influences of environmental and spatial factors on genetic and epigenetic variations in Rhododendron oldhamii (Ericaceae). Tree Genetics & Genomes 11: 823. http://dx.doi.org/10.1007/s11295-014-0823-0

Additionally, please cite the Dryad data package:

Huang C, Chen J, Tsang M, Chung J, Chang C, Hwang S (2014) Data from: Influences of environmental and spatial factors on genetic and epigenetic variations in Rhododendron oldhamii (Ericaceae). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.fm278
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