Data from: Geographic and temporal dynamics of a global radiation and diversification in the killer whale

Morin PA, Parsons KM, Archer FI, Ávila-Arcos MC, Barrett-Lennard LG, Dalla Rosa L, Duchêne S, Durban JW, Ellis GM, Ferguson SH, Ford JK, Ford MJ, Gabrilao C, Gilbert MTP, Kaschner K, Matkin CO, Petersen SD, Robertson KM, Visser IN, Wade PR, Ho SYW, Foote AD

Date Published: June 18, 2015

DOI: http://dx.doi.org/10.5061/dryad.fm4mk

 

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Title Dataset_S1_Killer_Whale_SNP_genotypes
Downloaded 20 times
Description O. orca SNP genotypes for 91 SNPs, 128 samples. Alleles have been re-coded for programs that only accept numerical alleles. G = 1, A =2 , C = 3, T = 4. Missing data are represented by 0.
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Title Dataset_S2_Beast_in_158mtGen_partitioned
Downloaded 19 times
Description Input xml file for phylogenetic analysis in the program BEAST 1.8, containing partitioned mitochondrial sequence data and phylogenetic analysis parameters as described in the methods.
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Title Dataset_S3_Beast_out_158mtGen_partitioned_consant
Downloaded 11 times
Description Tree file output from BEAST v1.8 phylogenetic analysis of the data from Dataset S2.
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Title Dataset_S4_SNAPPinput_AS7_42SNP_113indiv
Downloaded 10 times
Description Input xml file for analysis of SNP data in the program SNAPP, within the BEAST v2.0 package.
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Title Dataset_S5_SNAPPoutput_AS7_42SNP_113indiv
Downloaded 7 times
Description Output phylogenetic tree file from the program SNAPP, based on data and parameters in the input file Dataset_S4.
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Title Dataset_S6_Delphinidae
Downloaded 12 times
Description XML file of aligned Delphinidae mitochondrial genome sequences with partitions and parameters used for time-calibrated phylogenetic analysis in BEAST.
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Title Dataset_S7_Delphinidae
Downloaded 5 times
Description Maximum clade credibility tree file of Delphinidae mitochondrial phylogeny from BEAST analysis of Dataset_S6.
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When using this data, please cite the original publication:

Morin PA, Parsons KM, Archer FI, Ávila-Arcos MC, Barrett-Lennard LG, Dalla Rosa L, Duchêne S, Durban JW, Ellis GM, Ferguson SH, Ford JK, Ford MJ, Gabrilao C, Gilbert MTP, Kaschner K, Matkin CO, Petersen SD, Robertson KM, Visser IN, Wade PR, Ho SYW, Foote AD (2015) Geographic and temporal dynamics of a global radiation and diversification in the killer whale. Molecular Ecology 24(15): 3964–3979. http://dx.doi.org/10.1111/mec.13284

Additionally, please cite the Dryad data package:

Morin PA, Parsons KM, Archer FI, Ávila-Arcos MC, Barrett-Lennard LG, Dalla Rosa L, Duchêne S, Durban JW, Ellis GM, Ferguson SH, Ford JK, Ford MJ, Gabrilao C, Gilbert MTP, Kaschner K, Matkin CO, Petersen SD, Robertson KM, Visser IN, Wade PR, Ho SYW, Foote AD (2015) Data from: Geographic and temporal dynamics of a global radiation and diversification in the killer whale. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.fm4mk
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