Data from: Species level phylogeny and polyploid relationships in Hordeum (Poaceae) inferred by next-generation sequencing and in-silico cloning of multiple nuclear loci

Brassac J, Blattner FR

Date Published: June 4, 2015

DOI: http://dx.doi.org/10.5061/dryad.fn2nt

 

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Title Table S1 Individuals included in the study and number of reads per locus
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Title Table S2 Primers used in the PCR amplification of each locus
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Title *BEAST input file 12 loci random local clock
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Description xml file for Figure 2
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Title *BEAST species tree
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Description *BEAST output (TreeAnnotator) from three identical analyses combined with LogCombiner (raw tree Fig. 2)
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Title BCA output from BUCKy
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Description Concordance file obtained from BUCKy on 12 loci (raw data Fig. S15)
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Title Hordeum diploids Supermatrix
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Description 12 loci concatenated matrix, only diploids (data Fig. 1)
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Title Hordeum diploids Supermatrix Tree
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Description Bayesian Inference of Hordeum diploids Supermatrix (raw tree Fig. 1)
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Title matK all individuals Matrix
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Description Matrix locus matK (data for Fig. S14)
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Title matK all individuals Tree
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Description Tree locus matK (raw tree for Fig. S14)
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Title 26 loci supermatrix
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Description Matrix including all loci from this study and Petersen et al. 2011 for one individual per diploid species (data for Fig. S17)
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Title 26 loci supermatrix Tree
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Description Tree inferred from all loci from this study and Petersen et al. 2011 with one individual per diploid species (raw tree Fig. S17)
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Title Supplementary Information
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Description Supplementary Information containing annotated trees (Figs. S2-S17, S19), figures S1 and S18, tables S1 and S2 and references.
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When using this data, please cite the original publication:

Brassac J, Blattner FR (2015) Species level phylogeny and polyploid relationships in Hordeum (Poaceae) inferred by next-generation sequencing and in-silico cloning of multiple nuclear loci. Systematic Biology 64(5): 792-808. http://dx.doi.org/10.1093/sysbio/syv035

Additionally, please cite the Dryad data package:

Brassac J, Blattner FR (2015) Data from: Species level phylogeny and polyploid relationships in Hordeum (Poaceae) inferred by next-generation sequencing and in-silico cloning of multiple nuclear loci. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.fn2nt
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