Data from: Shaping development through mechanical strain: the transcriptional basis of diet-induced phenotypic plasticity in a cichlid fish

Gunter HM, Fan S, Xiong F, Franchini P, Fruciano C, Meyer A

Date Published: June 12, 2013

DOI: http://dx.doi.org/10.5061/dryad.fr27m

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title geometric morphometric landmarks of A_alluaudi LPJs
Downloaded 15 times
Description This file contains x and y co-ordinates of A. alluaudi lower pharyngeal jaws (LPJ) used in geometric morphometrics analyses, and calculations of area and centroid size (Figure 3a-c, Table S3). Co-ordinates are in millimeter scale, as set using the 'scale' function in ImageJ. Specimen names correspond those assigned in Table S1.
Download geometric morphometrics data.txt (5.094 Kb)
Details View File Details
Title linear morphometric measurements of A_alluaudi LPJs
Downloaded 37 times
Description This file describes the linear measurements, and weight measurements made of lower pharyngeal jaws (LPJ), and standard lengths of the A. alluaudi specimens, as used in statistical analyses of LPJ size (Figure 3a-b, Table S3). Linear measurements are in mm and weight measurements are in mg. Specimen names correspond those assigned in Table S1.
Download linear morphometrics data.xlsx (45.30 Kb)
Details View File Details
Title Candidate gene expression using qRT-PCR on A_alluaudi LPJs
Downloaded 42 times
Description This file contains the relative expression values of candidate genes, amplifying cDNA from lower pharyngeal jaws (LPJ) of the A. alluaudi specimens. The reported values have been scaled against normalisation factors (NF) that were calculated from 2 housekeeeping genes. These expression values were subjected to statistical analyses that are reported in Figure 4 a-c and Table S4. Specimen names correspond those assigned in Table S1.
Download qRT-PCR results.xls (34.81 Kb)
Details View File Details
Title Fasta files of RNA-seq contigs generated from A_alluaudi LPJs
Downloaded 13 times
Description This file contains .fasta files, generated through assembly of RNA-seq transcripts, derived from A. alluaudi specimens used in our study. These .fasta files were used for differential expression (DE) analyses and BLAST queries, the results of which are depicted in Figure 5 and Tables S5. In tables S6 and S7, these .fasta sequences were used as queries against the human genome, and significant hits were then used for relative enrichment analyses in DAVID.
Download RNA-seq transcripts.fasta (48.89 Mb)
Details View File Details

When using this data, please cite the original publication:

Gunter HM, Fan S, Xiong F, Franchini P, Fruciano C, Meyer A (2013) Shaping development through mechanical strain: the transcriptional basis of diet-induced phenotypic plasticity in a cichlid fish. Molecular Ecology 22(17): 4516-4531. http://dx.doi.org/10.1111/mec.12417

Additionally, please cite the Dryad data package:

Gunter HM, Fan S, Xiong F, Franchini P, Fruciano C, Meyer A (2013) Data from: Shaping development through mechanical strain: the transcriptional basis of diet-induced phenotypic plasticity in a cichlid fish. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.fr27m
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: