Data from: Advanced characterization of DNA molecules in rAAV vector preparations by single-stranded virus next-generation sequencing

Lecomte E, Tournaire B, Cogné B, Dupont J, Lindenbaum P, Martin-Fontaine M, Broucque F, Robin C, Hebben M, Merten O, Blouin V, Francois A, Redon R, Moullier P, Léger A

Date Published: October 27, 2015

DOI: http://dx.doi.org/10.5061/dryad.fs4cp

 

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Title Sample Corespondance
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Description Table indicating the correspondence between samples and IDs
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Title Chromosomal_distribution
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Description Read count in human chromosomes used for Figure 3
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Title References
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Description Fasta and Genbank files containing the sequences and annotations for the references non-available in public repositories (Ad5_in_293_genome, Backbone-AAV-CMV-GFP-hTK, Cassette_AAV-CMV-GFP-hTK, pDP8_Kana, SSV9K2-CMV-GFP-HygroTK-bGHpA)
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Title Variants
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Description VCF files and alternative allele counting files along rAAV genome, used for Figure 4 b.
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Title Coverage
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Description BED files containing the base per base sequencing coverage along rAAV genome + Summary table with normalized data. Used for Figure 4 a.
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Title Circos_Data
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Description Data and configuration file used to generate the Circos plot. Used for figure 5
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Title ContaVect_Configuration_Files
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Description Configuration files for each sample used to run ContaVect
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Title RUN1_S4_R1.fastq
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Description Raw fastq file containing data for sample id RUN1_S4 R1
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Title RUN1_S4_R2.fastq
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Description Raw fastq file containing data for sample id RUN1_S4 R2
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Title RUN1_S1_R1.fastq
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Description Raw fastq file containing data for sample id RUN1_S1 R1
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Title RUN1_S1_R2.fastq
Downloaded 10 times
Description Raw fastq file containing data for sample id RUN1_S1 R2
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Title RUN1_S2_R1.fastq
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Description Raw fastq file containing data for sample id RUN1_S2 R1
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Title RUN1_S2_R2.fastq
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Description Raw fastq file containing data for sample id RUN1_S2 R2
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Title RUN1_S3_R1.fastq
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Description Raw fastq file containing data for sample id RUN1_S3 R1
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Title RUN1_S3_R2.fastq
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Description Raw fastq file containing data for sample id RUN1_S3 R2
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Title RUN1_S5_R1.fastq
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Description Raw fastq file containing data for sample id RUN1_S5 R1
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Title RUN1_S5_R2.fastq
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Description Raw fastq file containing data for sample id RUN1_S5 R2
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Title RUN1_S6_R1.fastq
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Description Raw fastq file containing data for sample id RUN1_S6 R1
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Title RUN1_S6_R2.fastq
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Description Raw fastq file containing data for sample id RUN1_S6 R2
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Title RUN1_S7_R1.fastq
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Description Raw fastq file containing data for sample id RUN1_S7 R1
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Title RUN1_S7_R2.fastq
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Description Raw fastq file containing data for sample id RUN1_S7 R2
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Title RUN1_S8_R1.fastq
Downloaded 8 times
Description Raw fastq file containing data for sample id RUN1_S8 R1
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Title RUN1_S8_R2.fastq
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Description Raw fastq file containing data for sample id RUN1_S8 R2
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Title RUN2_S1_R1.fastq
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Description Raw fastq file containing data for sample id RUN2_S1 R1
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Title RUN2_S1_R2.fastq
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Description Raw fastq file containing data for sample id RUN2_S1 R2
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Title RUN2_S2_R1.fastq
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Description Raw fastq file containing data for sample id RUN2_S2 R1
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Title RUN2_S2_R2.fastq
Downloaded 3 times
Description Raw fastq file containing data for sample id RUN2_S2 R2
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Title RUN2_S3_R1.fastq
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Description Raw fastq file containing data for sample id RUN2_S3 R1
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Title RUN2_S3_R2.fastq
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Description Raw fastq file containing data for sample id RUN2_S3 R2
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Title RUN2_S4_R1.fastq
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Description Raw fastq file containing data for sample id RUN2_S4 R1
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Title RUN2_S4_R2.fastq
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Description Raw fastq file containing data for sample id RUN2_S4 R2
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Title RUN2_S5_R1.fastq
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Description Raw fastq file containing data for sample id RUN2_S5 R1
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Title RUN2_S5_R2.fastq
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Description Raw fastq file containing data for sample id RUN2_S5 R2
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Title RUN2_S6_R1.fastq
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Description Raw fastq file containing data for sample id RUN2_S6 R1
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Title RUN2_S6_R2.fastq
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Description Raw fastq file containing data for sample id RUN2_S6 R2
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Title RUN2_S7_R1.fastq
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Description Raw fastq file containing data for sample id RUN2_S7 R1
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Title RUN2_S7_R2.fastq
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Description Raw fastq file containing data for sample id RUN2_S7 R2
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Title RUN2_S8_R1.fastq
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Description Raw fastq file containing data for sample id RUN2_S8 R1
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Title RUN2_S8_R2.fastq
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Description Raw fastq file containing data for sample id RUN2_S8 R2
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When using this data, please cite the original publication:

Lecomte E, Tournaire B, Cogné B, Dupont J, Lindenbaum P, Martin-Fontaine M, Broucque F, Robin C, Hebben M, Merten O, Blouin V, Francois A, Redon R, Moullier P, Léger A (2015) Advanced characterization of DNA molecules in rAAV vector preparations by single-stranded virus next-generation sequencing. Molecular therapy. Nucleic acids 4: e260. http://dx.doi.org/10.1038/mtna.2015.32

Additionally, please cite the Dryad data package:

Lecomte E, Tournaire B, Cogné B, Dupont J, Lindenbaum P, Martin-Fontaine M, Broucque F, Robin C, Hebben M, Merten O, Blouin V, Francois A, Redon R, Moullier P, Léger A (2015) Data from: Advanced characterization of DNA molecules in rAAV vector preparations by single-stranded virus next-generation sequencing. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.fs4cp
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