Data from: Viruses are a dominant driver of protein adaptation in mammals

Enard D, Cai L, Gwennap C, Petrov DA

Date Published: May 17, 2016

DOI: http://dx.doi.org/10.5061/dryad.fs756

 

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Title Coding sequence alignments of 9,861 mammalian orthologs
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Description The compressed folder contains fasta coding sequence alignments of 9,861 mammalian orthologs. Best reciprocal hits of human Ensembl v69 coding sequences were obtained with Blat for 23 other mammalian species, and those best reciprocal sequences were then aligned with PRANK. Note that best reciprocal hits are not sufficient to establish orthology, and we recommend additional filtering with synteny information.
Download bestrecip_prank_alignments.tgz (64.59 Mb)
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When using this data, please cite the original publication:

Enard D, Cai L, Gwennap C, Petrov DA (2016) Viruses are a dominant driver of protein adaptation in mammals. eLife 5: e12469. http://dx.doi.org/10.7554/eLife.12469.001

Additionally, please cite the Dryad data package:

Enard D, Cai L, Gwennap C, Petrov DA (2016) Data from: Viruses are a dominant driver of protein adaptation in mammals. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.fs756
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