Data from: Whole genome resequencing of extreme phenotypes in collared flycatchers highlights the difficulty of detecting quantitative trait loci in natural populations

Kardos M, Husby A, McFarlane SE, Qvarnström A, Ellegren H

Date Published: December 10, 2015

DOI: http://dx.doi.org/10.5061/dryad.ft58s

 

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Title snpChipGWASTpedFile_27Nov2015
Downloaded 24 times
Description This file contains the SNP chip genotypes in PLINK .tped format. The genotypes are linked to identifications by the associated .tfam file.
Download snpChipGWASTpedFile_27Nov2015.tped (65.53 Mb)
Download README.txt (423 bytes)
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Title snpChipGWASTfamFile_27Nov2015
Downloaded 8 times
Description This is the .tfam file for the SNP chip data set.
Download snpChipGWASTfamFile_27Nov2015.tfam (8.499 Kb)
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Title snpChipGWASPhenotypes
Downloaded 5 times
Description This file contains the phenotype information for the SNP chip-based GWA analysis. The file contains columns for the individual ID, patch size, year of sampling, age at sampling.
Download snpChipGWAS_phenotypes_27Nov2015 (26.05 Kb)
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Title snpChipGwasResults
Downloaded 14 times
Description Output from RepeatABEL GWA analysis of the SNP chip data set.
Download snpChipGwasResults_25Nov2015 (2.176 Mb)
Download README.txt (591 bytes)
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Title resequencing_collaredFlycatcherGenotypes
Downloaded 7 times
Description This file contains the genotypes used in the GWA analysis of 81 genome-resequenced male collared flycatchers. The data are in PLINK .tped format.
Download resequencing_collaredFlycatcherGenotypes.tped (711.5 Mb)
Download README.txt (413 bytes)
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Title resequencing_collaredFlycatcherGenotypes
Downloaded 6 times
Description This is the PLINK .tfam format file for the genotypes of the 81 genome-resequenced male collared flycatchers.
Download resequencing_collaredFlycatcherGenotypes.tfam (1.558 Kb)
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Title resequencingCollaredFlycatchers_phenotypes
Downloaded 5 times
Description This file contains the phenotype information used in the GWA analysis of 81 genome-resequenced male collared flycatchers. The file contains columns for identification, year, age at sampling, patch size, and year born.
Download resequencing_GWAS_phenotypes_27Nov20125 (5.109 Kb)
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Title resequencingGwasResults
Downloaded 17 times
Description This file contains the output from RepeatABEL GWA analysis of the 81 genome-resequenced collared flycatcher males.
Download resequencing_GWASResults_25Nov2015 (108.5 Mb)
Download README.txt (397 bytes)
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When using this data, please cite the original publication:

Kardos M, Husby A, McFarlane SE, Qvarnström A, Ellegren H (2015) Whole genome resequencing of extreme phenotypes in collared flycatchers highlights the difficulty of detecting quantitative trait loci in natural populations. Molecular Ecology Resources 16(3): 727-741. http://dx.doi.org/10.1111/1755-0998.12498

Additionally, please cite the Dryad data package:

Kardos M, Husby A, McFarlane SE, Qvarnström A, Ellegren H (2015) Data from: Whole genome resequencing of extreme phenotypes in collared flycatchers highlights the difficulty of detecting quantitative trait loci in natural populations. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.ft58s
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