Data from: Nonparallelism in MHC IIβ diversity accompanies nonparallelism in pathogen infection of lake whitefish (Coregonus clupeaformis) species pairs as revealed by next generation sequencing

 

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Title R_scripts_inputs_outputs.tar
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Description Here are the R scripts as well as input and output files for the statistical analyses for this paper.
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Title SplitsTree.tar
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Description This folder contains the fasta input files and nexus files for each of the two splitstree networks in the paper.
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Title Pathogen_data.tar
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Description Sequence data from Lake whitefish kidney tissue for both dwarf and normal forms from all five lakes
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Title MHC_454
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Description This compressed file contains two folders with all of the raw 454 files for MHCIIb for this project. Each file name includes on of three libraries (02, 03, or 04) and a MID number 1-153. These numbers correspond to various spreadsheets in the R scripts folder.
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When using this data, please cite the original publication:

Pavey SA, Sevellec M, Normandeau É, Lamaze FC, Gagnaire P, Filteau M, Hébert FO, Maaroufi H, Bernatchez L (2013) Nonparallelism in MHC IIβ diversity accompanies nonparallelism in pathogen infection of lake whitefish (Coregonus clupeaformis) species pairs as revealed by next generation sequencing. Molecular Ecology 22(14): 3833–3849. http://dx.doi.org/10.1111/mec.12358

Additionally, please cite the Dryad data package:

Pavey SA, Sevellec M, Normandeau É, Lamaze FC, Gagnaire P, Filteau M, Hébert FO, Maaroufi H, Bernatchez L (2013) Data from: Nonparallelism in MHC IIβ diversity accompanies nonparallelism in pathogen infection of lake whitefish (Coregonus clupeaformis) species pairs as revealed by next generation sequencing. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.ft94b
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