Data from: Resolving the phylogeny of lizards and snakes (Squamata) with extensive sampling of genes and species

 

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Title Data matrix for likelihood analysis
Downloaded 79 times
Description Data matrix of 44 genes for 161 squamate reptile species and 10 outgroup species. The matrix is used for maximum likelihood analysis with RAxML. A separate file specifies the models and data partitions.
Download sq44locus_RAXML (5.770 Mb)
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Title Models and partitions for likelihood analysis
Downloaded 27 times
Description This file specifies the models and partitions used in the likelihood analysis (with RAxML).
Download sq_models_RAXML (3.906 Kb)
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Title Data matrix for concatenated Bayesian analysis
Downloaded 69 times
Description Data matrix used for concatenated Bayesian analysis of 44 genes and 161 squamate species (and 10 outgroup species), utilizing MrBayes.
Download squam44locus_MrB.nexus (6.084 Mb)
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Title Data matrix for Bayesian species-tree analysis
Downloaded 45 times
Description Data matrix of 44 genes and 29 squamate species (and 2 outgroup species) for Bayesian species-tree analysis utilizing *BEAST.
Download squamate44locus_*BEAST.xml (1.927 Mb)
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When using this data, please cite the original publication:

Wiens JJ, Hutter CR, Mulcahy DG, Noonan BP, Townsend TM, Sites Jr JW, Reeder TW (2012) Resolving the phylogeny of lizards and snakes (Squamata) with extensive sampling of genes and species. Biology Letters 8(6): 1043-1046. http://dx.doi.org/10.1098/rsbl.2012.0703

Additionally, please cite the Dryad data package:

Wiens JJ, Hutter CR, Mulcahy DG, Noonan BP, Townsend TM, Sites Jr. JW, Reeder TW (2012) Data from: Resolving the phylogeny of lizards and snakes (Squamata) with extensive sampling of genes and species. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.g1gd8
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