Data from: Illuminating the base of the annelid tree using transcriptomics

Weigert A, Helm C, Meyer M, Nickel B, Arendt D, Hausdorf B, Santos SR, Halanych KM, Purschke G, Bleidorn C, Struck TH

Date Published: February 25, 2014

DOI: http://dx.doi.org/10.5061/dryad.g2qp5

 

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Title Alignment_Dataset_72-2
Downloaded 22 times
Description Alignment of the dataset comprising 72 taxa with MARE α=2 applied
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Title Alignment_Dataset_77-1.5
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Description Alignment of the dataset comprising 77 taxa with MARE α=1.5 applied.
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Title Alignment_Dataset_77-1
Downloaded 18 times
Description Alignment of the dataset comprising 77 taxa with MARE α=1 applied.
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Title Alignment_Dataset_77-2
Downloaded 8 times
Description Alignment of the dataset comprising 77 taxa with MARE α=2 applied.
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Title Alignment_Dataset_79-1.5
Downloaded 7 times
Description Alignment of the dataset comprising 79 taxa with MARE α=1.5 applied.
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Title Alignment_Dataset_79-1
Downloaded 25 times
Description Alignment of the dataset comprising 79 taxa with MARE α=1 applied.
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Title Alignment_Dataset_79-2
Downloaded 13 times
Description Alignment of the dataset comprising 79 taxa with MARE α=2 applied.
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Title Supplementary File S1_Amphinomida within Errantia
Downloaded 32 times
Description Plot of psL of each constrained analysis in comparison to the best tree
Download Supplementary File S1_Amphinomida within E....xlsx (4.274 Mb)
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Title Supplementary File S2_Chaetopteridae and Magelona within Sedentaria
Downloaded 33 times
Description Plot of psL of each constrained analysis in comparison to the best tree
Download Supplementary File S2_Chaetopteridae and M....xlsx (4.269 Mb)
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Title Supplementary File S3_Chaetopteridae within Sedentaria
Downloaded 26 times
Description Plot of psL of each constrained analysis in comparison to the best tree
Download Supplementary File S3_Chaetopteridae withi....xlsx (4.256 Mb)
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Title Supplementary File S4_Magelona and Oweniidae within Sedentaria
Downloaded 32 times
Description Plot of psL of each constrained analysis in comparison to the best tree
Download Supplementary File S4_Magelona and Oweniid....xlsx (4.228 Mb)
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Title Supplementary File S5_Oweniidae and Chaetopteridae within Sedentaria
Downloaded 28 times
Description Plot of psL of each constrained analysis in comparison to the best tree
Download Supplementary File S5_Oweniidae and Chaeto....xlsx (4.226 Mb)
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Title Supplementary File S6_Magelona within Sedentaria
Downloaded 29 times
Description Plot of psL of each constrained analysis in comparison to the best tree
Download Supplementary File S6_Magelona within Sede....xlsx (4.262 Mb)
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Title Supplementary File S7_Oweniidae and Chaetopteridae within Sedentaria
Downloaded 36 times
Description Plot of psL of each constrained analysis in comparison to the best tree
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Title Supplementary File S8_Oweniidae within Sedentaria
Downloaded 33 times
Description Plot of psL of each constrained analysis in comparison to the best tree
Download Supplementary File S8_Oweniidae within Sed....xlsx (4.238 Mb)
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Title Supplementary File S9_Sipuncula outside Annelida
Downloaded 27 times
Description Plot of psL of each constrained analysis in comparison to the best tree
Download Supplementary File S9_Sipuncula outside An....xlsx (4.213 Mb)
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Title Supplementary Files S10_MorphologicalMatrix_Likelihood
Downloaded 15 times
Description Morphological matrix of the ancestral reconstruction using the likelihood criterion.
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Title Supplementary Files S11_MorphologicalMatrix_Parsimony
Downloaded 14 times
Description Morphological matrix of the ancestral reconstruction using the parsimony criterion.
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Title lophotrochozoa_hmmer3.tar
Downloaded 34 times
Description Core-ortholog set used for orthology prediction with HaMStR. The set was generated using proteomes from seven primer taxa (Helobdella robusta, Capitella teleta, Lottia gigantea, Schistosoma mansoni, Daphnia pulex, Apis mellifera and Caenorhabditis elegans) and comprises 2,33 orthologous genes.
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When using this data, please cite the original publication:

Weigert A, Helm C, Meyer M, Nickel B, Arendt D, Hausdorf B, Santos SR, Halanych KM, Purschke G, Bleidorn C, Struck TH (2014) Illuminating the base of the annelid tree using transcriptomics. Molecular Biology and Evolution 31(6): 1391-1401. http://dx.doi.org/10.1093/molbev/msu080

Additionally, please cite the Dryad data package:

Weigert A, Helm C, Meyer M, Nickel B, Arendt D, Hausdorf B, Santos SR, Halanych KM, Purschke G, Bleidorn C, Struck TH (2014) Data from: Illuminating the base of the annelid tree using transcriptomics. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.g2qp5
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