Data from: Kicking Triturus arntzeni when it’s down: large-scale nuclear genetic data confirm that newts from the type locality are genetically admixed

Wielstra B, Arntzen JW

Date Published: May 31, 2014

DOI: http://dx.doi.org/10.5061/dryad.g3375

 

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Title 1 - FASTQ_IonTorrent
Downloaded 12 times
Description Raw Ion Torrent reads in FASTQ format
Download 1 - FASTQ_IonTorrent.zip (58.60 Mb)
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Title 2 - SAM_alignments
Downloaded 11 times
Description BWA alignments in SAM format
Download 2 - SAM_alignments.zip (59.25 Mb)
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Title 3 - VCF_raw_SNP_reports
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Description Raw SNP reports in VCF format
Download 3 - VCF_raw_SNP_reports.zip (28.55 Kb)
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Title 4 - Filtered_SNP_report
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Description Filtered SNP report used to construct consensus sequences
Download 4 - Filtered_SNP_report.xlsx (27.59 Kb)
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Title 5 - Number_reads
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Description Number of reads per individual per marker
Download 5 - Number_reads.xlsx (12.86 Kb)
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Title 6 - Genotypic_data
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Description Table containing data in genotypic format
Download 6 - Genotypic_data.xlsx (35.87 Kb)
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Title 7 - Allelic_variants
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Description Allelic variants per marker
Download 7 - Allelic_variants.xlsx (16.51 Kb)
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Title 8 - Reconstructed_sequences_FASTA
Downloaded 15 times
Description FASTA files of reconstructed sequences
Download 8 - Reconstructed_sequences_FASTA.zip (35.60 Kb)
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Title 9 - BAPS_input
Downloaded 14 times
Description BAPS input file (GENEPOP format)
Download 9 - BAPS_input.txt (21.70 Kb)
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Title 10 - Structure_input
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Description Structure input file
Download 10 - Structure_input.txt (13.04 Kb)
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Title 11 - BAPS_Structure_output
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Description The BAPS and Structure output
Download 11 - BAPS_Structure_output.xlsx (14.19 Kb)
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Title 12 - NewHybrids_input
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Description NewHybrids input file
Download 12 - NewHybrids_input.zip (1.835 Kb)
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Title 13 - Alle_proportion
Downloaded 15 times
Description Table with distribution of T. ivanbureschi and T. macedonicus alleles in newts from the T. arntzeni type locality
Download 13 - Alle_proportion.xlsx (19.07 Kb)
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When using this data, please cite the original publication:

Wielstra B, Arntzen JW (2014) Kicking Triturus arntzeni when it’s down: large-scale nuclear genetic data confirm that newts from the type locality are genetically admixed. Zootaxa 3802(3): 381-388. http://dx.doi.org/10.11646/zootaxa.3802.3.7

Additionally, please cite the Dryad data package:

Wielstra B, Arntzen JW (2014) Data from: Kicking Triturus arntzeni when it’s down: large-scale nuclear genetic data confirm that newts from the type locality are genetically admixed. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.g3375
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