Data from: Genome-wide analysis of alternative splicing in Zea mays: landscape and genetic regulation

Thatcher SR, Zhou W, Leonard A, Wang B, Beatty M, Zastrow-Hayes G, Zhao X, Baumgarten A, Li B

Date Published: September 24, 2014

DOI: http://dx.doi.org/10.5061/dryad.g3v15

 

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Title RNA-seq libraries used for transcript discovery and alternative splicing analysis
Downloaded 88 times
Description RNA-seq libraries used for transcript discovery and alternative splicing analysis
Download tpc130773_SupplementalDS1.xls (108.0 Kb)
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Title Known and novel transcripts' cDNA, protein and expression information
Downloaded 83 times
Description Known and novel transcripts' cDNA, protein and expression information
Download tpc130773_SupplementalDS2.txt (304.3 Mb)
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Title Novel transcripts which gained or lost miRNA target sites relative to their most similar known isoform
Downloaded 95 times
Description Novel transcripts which gained or lost miRNA target sites relative to their most similar known isoform
Download tpc130773_SupplementalDS3.xls (2.683 Mb)
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Title Expression of genes with Gene Ontology (GO) categories associated with alternative splicing
Downloaded 60 times
Description Expression of genes with Gene Ontology (GO) categories associated with alternative splicing
Download tpc130773_SupplementalDS4.xls (286.7 Kb)
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Title Expression and mapping results for genes with statistically significant (q < 0.05) genotype-dependent alternative splicing variations
Downloaded 81 times
Description Expression and mapping results for genes with statistically significant (q < 0.05) genotype-dependent alternative splicing variations
Download tpc130773_SupplementalDS5.xls (4.085 Mb)
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Title Expression of genes with statistically significant expression differences in tissue and genotypic tests
Downloaded 78 times
Description Expression of genes with statistically significant expression differences in tissue and genotypic tests
Download tpc130773_SupplementalDS6.xls (5.040 Mb)
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Title Primers used to amplify known and novel isoforms
Downloaded 56 times
Description Primers used to amplify known and novel isoforms
Download tpc130773_SupplementalDS7.xls (35.84 Kb)
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When using this data, please cite the original publication:

Thatcher SR, Zhou W, Leonard A, Wang B, Beatty M, Zastrow-Hayes G, Zhao X, Baumgarten A, Li B (2014) Genome-wide analysis of alternative splicing in Zea mays: landscape and genetic regulation. The Plant Cell 26(9): 3472-3487. http://dx.doi.org/10.1105/tpc.114.130773

Additionally, please cite the Dryad data package:

Thatcher SR, Zhou W, Leonard A, Wang B, Beatty M, Zastrow-Hayes G, Zhao X, Baumgarten A, Li B (2014) Data from: Genome-wide analysis of alternative splicing in Zea mays: landscape and genetic regulation. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.g3v15
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