Data from: Population structure within an alpine archipelago: strong signature of past climate change in the New Zealand rock wren (Xenicus gilviventris)

Weston KA, Robertson BC

Date Published: August 18, 2015

DOI: http://dx.doi.org/10.5061/dryad.g44c1

 

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Title Allele-level genotype data for 134 Rock wren (Xenicus gilviventris) genotyped at 14 microsatellite loci
Downloaded 43 times
Description Allele-level genotype data for 134 Rock wren (Xenicus gilviventris) genotyped at 14 microsatellite loci. Additional sample information includes GPS (NZTM) coordinates for each individual's sampling location.
Download X. gilviventris genotyped individuals.xlsx (28.88 Kb)
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Title Cytochrome b sequence data for X. gilvivientris
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Description Cytochrome b sequence data for twenty X. gilvivientris individuals from throughout their range.
Download X. gilviventris Cyt b sequence data.fasta (21.76 Kb)
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Title Xenicus gilviventris MtDNA Control Region sequence data
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Description MtDNA Control Region sequence data for 25 Xenicus gilviventris individuals from throughout their range.
Download X.gilviventris Cntrl Reg sequence data.fasta (28.47 Kb)
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Title Xenicus gilviventris beta fibrinogen intron 7 sequence data
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Description Unphased nuclear beta-fibrinogen intron-7 sequence data for 18 Xenicus giliventris individuals, sampled from throughout their range
Download X. gilviventris b-fib int7 sequence data.fasta (9.791 Kb)
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Title Matrix of pairwise geographic distances (in kilometres) among eight rock wren (Xenicus gilviventris) populations across the South Island, New Zealand.
Downloaded 26 times
Description hic distances (in kilometres) among eight rock wren (Xenicus gilviventris) populations across the South Island, New Zealand. Used to perform Mantel test (Figure S3).
Download X. gilviventris pairwise geographic distances.xlsx (9.715 Kb)
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Title Matrix of pairwise geographic distances (kilometres) among three rock wren (Xenicus gilviventris) populations across the northern South Island, New Zealand
Downloaded 22 times
Description Matrix of pairwise geographic distances (kilometres) among three rock wren (Xenicus gilviventris) populations across the northern South Island, New Zealand. Used to perform Mantel test (Figure S4a).
Download X. gilviventris pairwise geographic distan....xlsx (9.035 Kb)
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Title Matrix of pairwise geographic distances (kilometres) among five rock wren (Xenicus gilviventris) populations across the southern South Island, New Zealand.
Downloaded 20 times
Description Matrix of pairwise geographic distances (kilometres) among five rock wren (Xenicus gilviventris) populations across the southern South Island, New Zealand. Used to perform Mantel test (Figure S4b).
Download X. gilviventris pairwise geographic distan....xlsx (8.254 Kb)
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Title Bayesian cytochrome b phylogenetic tree file for rock wren (Xenicus gilviventris)
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Description Bayesian cytochrome b phylogenetic tree file for rock wren (Xenicus gilviventris) using BEAST
Download cytb tree_beast.txt (18.82 Kb)
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Title Bayesian phylogenetic tree file using control region (1126-bp)
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Description Bayesian phylogenetic tree file for rock wren (Xenicus gilviventris) using control region (1126-bp) (Figure S1).
Download Cntrl reg FULL.tre (14.26 Kb)
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Title Bayesian phylogenetic tree file for using control region 1st domain
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Description Bayesian phylogenetic tree file for rock wren (Xenicus gilviventris) using control region 1st domain (Figure ).
Download Bayes 1stdomain cntl reg.tre (24.49 Kb)
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Title Bayesian phylogenetic tree file - beta fibrinogen intron 7
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Description Bayesian phylogenetic tree file for rock wren (Xenicus gilviventris) using beta fibrinogen intron 7 (Figure 5).
Download fig tree bfibphased.tre (15.88 Kb)
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Title Maximum likelihood β-fibrinogen tree file
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Description Maximum likelihood phylogeny of rock wren (Xenicus gilviventris) using the nuclear β-fibrinogen intron-7.
Download ML beta_ fib.tree (6.29 Kb)
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Title Maximum parsimony tree file using nuclear β-fibrinogen intron-7.
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Description Maximum parsimony phylogeny of rock wren (Xenicus gilviventris) using the nuclear β-fibrinogen intron-7.
Download MP beta_fib.tree (1.999 Kb)
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Title Maximum Likelihood tree file using cytochrome b
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Description Maximum likelihood phylogeny of rock wren (Xenicus gilviventris) using cytochrome b
Download ML cyt b.tree (4.73 Kb)
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Title Maximum parsimony tree file using cytochrome b
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Description Maximum parsimony phylogeny of rock wren (Xenicus gilviventris) using cytochrome b
Download MP cyt b.tree (4.428 Kb)
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Title Maximum likelihood phylogeny tree file using 1st domain of the control region.
Downloaded 5 times
Description Maximum likelihood phylogeny of rock wren (Xenicus gilviventris) using the 1st domain of the control region.
Download ML Cntrl reg 1st dom.tree (8.502 Kb)
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Title Maximum parsimony phylogeny tree file using 1st domain of the control region.
Downloaded 3 times
Description Maximum parsimony phylogeny of rock wren (Xenicus gilviventris) using the 1st domain of the control region.
Download MP Cntrl reg 1st dom.tree (5.975 Kb)
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Title Maximum likelihood phylogeny tree file using the mtDNA control region.
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Description Maximum likelihood phylogeny of rock wren (Xenicus gilviventris) using the mtDNA control region.
Download ML cntrl reg.tree (5.698 Kb)
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When using this data, please cite the original publication:

Weston KA, Robertson BC (2015) Population structure within an alpine archipelago: strong signature of past climate change in the New Zealand rock wren (Xenicus gilviventris). Molecular Ecology 24(18): 4778–4794. http://dx.doi.org/10.1111/mec.13349

Additionally, please cite the Dryad data package:

Weston KA, Robertson BC (2015) Data from: Population structure within an alpine archipelago: strong signature of past climate change in the New Zealand rock wren (Xenicus gilviventris). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.g44c1
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