Data from: Inferring the mode of origin of polyploid species from next-generation sequence data

Roux C, Pannell JR

Date Published: January 15, 2015

DOI: http://dx.doi.org/10.5061/dryad.g611t

 

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Title Simulation of polyploid scenarios
Downloaded 22 times
Description priorgenWGD.py is a python script to generate prior distribution for the nine described models (a detailed help-menu is available typing ./priorgenWGD.py --help), bpfile_test.txt is an example file used by priorgenWGD.py, and text_S1.docx contains the used command-lines.
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Title Capsella_alignments.tar
Downloaded 10 times
Description Used alignements for the empirical application from Capsella. The sequences came from St Onge KR, Foxe JP, Li J et al. (2012, Molecular biology and evolution), Slotte T, Huang H, Lascoux M, Ceplitis A (2008, Molecular biology and evolution) and Foxe JP, Slotte T, Stahl EA et al. (2009, Proceedings of the National Academy of Sciences of the United States of America).
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When using this data, please cite the original publication:

Roux C, Pannell JR (2015) Inferring the mode of origin of polyploid species from next-generation sequence data. Molecular Ecology 24(5): 1047-1059. http://dx.doi.org/10.1111/mec.13078

Additionally, please cite the Dryad data package:

Roux C, Pannell JR (2015) Data from: Inferring the mode of origin of polyploid species from next-generation sequence data. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.g611t
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