Data from: Evolution and selection of Rhg1, a copy-number variant nematode-resistance locus

Lee TG, Kumar I, Diers BW, Hudson ME

Date Published: March 3, 2015

DOI: http://dx.doi.org/10.5061/dryad.g6311

 

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Title WGS_S1toS3.xlsx
Downloaded 41 times
Description Analyses-ready data for Fig. 3 (a pre-processed file that contains 18 accessions and nucleotide sequence within S1, S2, & S3 region).
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Title Infinium_1.5Mb
Downloaded 17 times
Description Analyses-ready data in the PHYLIP format for Figs 4 & 5 (a pre-processed file that contains 19,548 accessions and concatenated sequence alignments within 1.5 Mb region).
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Title 10SNPs
Downloaded 24 times
Description Analyses-ready data for Fig. 6 (a pre-processed file that contains 15,996 accessions and concatenated 10 nucleotide sequence alignments).
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Title Newick
Downloaded 8 times
Description Newick format tree files for Figs 3c & 6. S1.nwk: Fig. 3c. S2.nwk: Fig. 3c. S3.nwk: Fig. 3c. 15996.nwk: Fig. 6.
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Title Perl scripts
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Description Perl scripts used in this study.
Download Scripts.zip (7.117 Kb)
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Title Rhg1_CNV.sh
Downloaded 19 times
Description A shell script to generate SAM/BAM/mpileup files.
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Title subpopulation
Downloaded 36 times
Description Analyses-ready data for Fig. 5. The list of accessions for each subpopulation.
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Title VCF files
Downloaded 7 times
Description VCF outputs from VarScan
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When using this data, please cite the original publication:

Lee TG, Kumar I, Diers BW, Hudson ME (2015) Evolution and selection of Rhg1, a copy-number variant nematode-resistance locus. Molecular Ecology 24(8): 1774-1791. http://dx.doi.org/10.1111/mec.13138

Additionally, please cite the Dryad data package:

Lee TG, Kumar I, Diers BW, Hudson ME (2015) Data from: Evolution and selection of Rhg1, a copy-number variant nematode-resistance locus. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.g6311
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