Data from: Testing for ecological limitation of diversification: a case study using parasitic plants

Hardy NB, Cook LG

Date Published: June 13, 2012

DOI: http://dx.doi.org/10.5061/dryad.g6r70

 

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Title GammaSpot
Downloaded 26 times
Description R function. Has one argument, a phylogenetic tree of class phylo. Returns a vector with 2 elements. The first is the subtree with the lowest Gamma statistic. The second is an ordered vector of subtree Gamma statistics.
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Title Monotropoideae_Arbutoideae_chrono
Downloaded 28 times
Description BEAST estimate of relationships and divergence times among species of parasitic Monotropoideae species and autotrophic Arbutoideae species.
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Title Monotropoideae_Arbutoideae_BEAST
Downloaded 18 times
Description XML file for BEAST. This was used to get tree in Monotropoideae_Arbutoideae_chrono.tre.
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Title BoraginaceaeML_SH
Downloaded 79 times
Description Boraginaceae phylogeny in newick format with local SH nodal supports. Tree estimated with RAxML from multilocus DNA sequence dataset.
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Title EricalesML_SH
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Description Ericales phylogeny in newick format with local SH support values on nodes. Tree estimated with RAxML from multi-locus DNA dataset.
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Title Ericales
Downloaded 24 times
Description Ericales DNA sequence data in relaxed phylip format used by RAxML.
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Title Ericales_partition
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Description File to specify data partitions for RAxML. The DNA sequence data was partitioned by genome and codon position.
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Title Boraginaceae
Downloaded 19 times
Description Boraginaceae DNA data in relaxed phylip format.
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Title Boraginaceae_partition
Downloaded 18 times
Description File to specify DNA partitions to RAxML. Data were partitioned by genome and codon position.
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When using this data, please cite the original publication:

Hardy NB, Cook LG (2012) Testing for ecological limitation of diversification: a case study using parasitic plants. American Naturalist 180(4): 438-449. http://dx.doi.org/10.1086/667588

Additionally, please cite the Dryad data package:

Hardy NB, Cook LG (2012) Data from: Testing for ecological limitation of diversification: a case study using parasitic plants. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.g6r70
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