Data from: Open water camouflage via 'leaky' light guides in the midwater squid Galiteuthis

Holt AL, Sweeney AM

Date Published: June 16, 2016

DOI: http://dx.doi.org/10.5061/dryad.g703s

 

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Title Meep front end control file for FDTD calculation
Downloaded 11 times
Description This the scheme code written for calculating transmittance down biological fibers using Meep, the open source Finite Difference Time Domain (FDTD) software. The output of this code are absolute flux values through each defined flux plane determined using FDTD.
Download eps3Dtrans3.ctl (10.07 Kb)
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Title h5 files for input in eps3Dtrans3.ctl
Downloaded 3 times
Description These h5 files are files necessary for inputing arbitrary dielectric structure to front end code for meep. These files were generated from binary TEM images of biological light guides. Transmittance through fibers with these cross sections were described in the paper.
Download h5files.zip (2.356 Mb)
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Title TEM images
Downloaded 4 times
Description These are TEM images in tiff format described by the paper. These images were made binary and de-speckled for use in Meep FDTD code.
Download TEMimages.zip (11.82 Mb)
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Title Hydrolight Calculation file
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Description Matlab file containing Hydrolight runs for 480 nm using ac-9 casts from NASA's SeaBASS ocean optics database.
Download HydrolightCalcs.mat (5.047 Mb)
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When using this data, please cite the original publication:

Holt AL, Sweeney AM (2016) Open water camouflage via 'leaky' light guides in the midwater squid Galiteuthis. Journal of the Royal Society Interface 13(119): 20160230. http://dx.doi.org/10.1098/rsif.2016.0230

Additionally, please cite the Dryad data package:

Holt AL, Sweeney AM (2016) Data from: Open water camouflage via 'leaky' light guides in the midwater squid Galiteuthis. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.g703s
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