Data from: Genetic distance for a general non-stationary Markov substitution process

Kaehler BD, Yap VB, Zhang R, Huttley GA

Date Published: January 13, 2015

DOI: http://dx.doi.org/10.5061/dryad.g7g0n

 

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Title mitochondrial
Downloaded 6 times
Description Nexus alignments of mtDNA protein coding sequences from one-to-one orthologs of Mouse, Human and Opossum. The Ensembl release 68 stable ID for the Human gene is used as the filename. Species common names are used as the sequence labels.
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Title nuclear
Downloaded 12 times
Description Nexus alignments of nuclear protein coding sequences from one-to-one orthologs of Mouse, Human and Opossum. The Ensembl release 68 stable ID for the Human gene is used as the filename. Species common names are used as the sequence labels.
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Title microbial
Downloaded 5 times
Description Nexus formatted alignments of 16S rRNA sequences from 3 microbial species. Files differ in species triples present. These alignments were derived from http://www.secondgenome.com/go/2011-greengenes-taxonomy/. File names are the greengenes sequence identifiers.
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Title Online appendix
Downloaded 24 times
Description Supplementary figures and table.
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Title Analysis source code
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Description Code used to perform the analyses.
Download //bitbucket.org/nonstationary/geneticdistance (0 bytes)
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Title PyCogent library
Description The git repo for PyCogent. Capabilities required for this project were included in https://github.com/pycogent/pycogent commit 6fb91188d4ced898c66529ef85a43e742d5b39b5.
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When using this data, please cite the original publication:

Kaehler BD, Yap VB, Zhang R, Huttley GA (2015) Genetic distance for a general non-stationary Markov substitution process. Systematic Biology 64(2): 281-293. http://dx.doi.org/10.1093/sysbio/syu106

Additionally, please cite the Dryad data package:

Kaehler BD, Yap VB, Zhang R, Huttley GA (2014) Data from: Genetic distance for a general non-stationary Markov substitution process. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.g7g0n
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