Data from: Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways

Verma H, Kumar R, Oldach P, Sangwan N, Khurana JP, Gilbert JA, Lal R

Date Published: January 23, 2015

DOI: http://dx.doi.org/10.5061/dryad.g7t27

 

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Title 16S rRNA gene sequences alignment
Downloaded 6 times
Description 16S rRNA gene sequences alignment for nine Sphingobium genomes under study
Download 16S9sphingos final uploaded.aln (17.56 Kb)
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Title single copy genes final9genomes.fasta2
Downloaded 2 times
Description single copy genes alignment of nine Sphingobium genomes under study. The amino acid sequences of 28 universally present single copy genes i.e., dnaA, frr, gyrB, infB, mnmA, nusA, pheS, rplB, rplC, rplM, rplS, rpoA, rpsB, rpsC, rpsH, rpsI, rpsJ, rpsS, trmD, tef, ychF, alaS, rplE, uvrC, lepA, rplI, rplP and rplD were used.
Download single copy genes final9genomes.fasta2.aln (129.4 Kb)
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Title tetra co-relation value
Downloaded 3 times
Description tetra co-relation value among the Sphingobium strains pairs.
Download tetraallcorelationfinal.txt (693 bytes)
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Title Average Nucleotide Identity 9 GENOMES
Downloaded 3 times
Description Average Nucleotide Identity (ANI) pairwise comparison between nine Sphingobium spp.
Download ANI9GENOMES.txt (761 bytes)
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When using this data, please cite the original publication:

Verma H, Kumar R, Oldach P, Sangwan N, Khurana JP, Gilbert JA, Lal R (2014) Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways. BMC Genomics 15: 1014. http://dx.doi.org/10.1186/1471-2164-15-1014

Additionally, please cite the Dryad data package:

Verma H, Kumar R, Oldach P, Sangwan N, Khurana JP, Gilbert JA, Lal R (2014) Data from: Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.g7t27
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